Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02980 ATGGCAACCAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGAACAAGCACTGAGGTGAAGAAACGGGTGTATGTTTGCCCGGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAGGCCCATCAGAAAACTTGTGGCACCAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGACGCATTAACCGAAGAAAACAATAGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAACCTGCAAAGTCAAATACCTGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCATATGACCCTAAGAACCCACTAAAATCACTCCCCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAACCATGCCTCCTTCTTCTTCCAGCCTCCAACTAGGTTCCAACACATCATCAAGCTTCAATTACTTGCAAGACAACAAAAGCGGAGGACTAATTGCTGCCTCAGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTACTGGCACTACTGCTCCTGATCATGTTTCTTCCACTAGGCCACCATATTCCGGTGCCATGCTGCAGCATAACAACTCCTATGAACATTTCTGTCCGCAGCCTGATCTTTCCAACATGGCAGGGGTGAGTGGTGGAGGAGCATTCATCAACCAACTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACCAACACTGCCGGGTCTAACATGAATGATGTGGGAATGTTCAGCCAAATGCCACTGGGGAGTGACCACAACCCGGGATTGATGAAGAATGTCGAACAAGAAGTTAGTAATTGTTCTAGTTTGATCCACGGAAGAGATGTGGTTGAAGGTAACCCAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCAAGAGTCATGAATCATTTTCATCACCATTTTCCACACGAGGATTCAGCTATGGAGGAACACATGTGGGATGTTTGA 1338 0.4604 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNTSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKTMPPSSSSLQLGSNTSSSFNYLQDNKSGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVTGTTAPDHVSSTRPPYSGAMLQHNNSYEHFCPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTAGSNMNDVGMFSQMPLGSDHNPGLMKNVEQEVSNCSSLIHGRDVVEGNPMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSAMEEHMWDV* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02980 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Phac1g02980 445 FunFam Zinc finger protein MAGPIE 2 29 - -
Phac1g02980 445 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Phac1g02980 445 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Phac1g02980 445 Gene3D Classic Zinc Finger 6 48 - -
Phac1g02980 445 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Phac1g02980 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 425 IPR031140 -
Phac1g02980 445 Gene3D Classic Zinc Finger 60 140 - -
Phac1g02980 445 SMART c2h2final6 47 77 IPR013087 -
Phac1g02980 445 SMART c2h2final6 6 28 IPR013087 -
Phac1g02980 445 SMART c2h2final6 82 102 IPR013087 -
Phac1g02980 445 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02980 Phac-Chr1 38269544 38271060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02980 1 267 IDZ Gene Family AT3G50700 53.952 1.65e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g02980 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02980 - - gmx:100782774 826.239