LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g02969	ATGGTGGAAAGAAGAAGAAAGCCTTTGATACTGTGTTCCACCAAACATGTCATCAATTCAACTGCTCCAACCACCAATCTCTTCCACCGTGATTCTTCTCCCTCCTTCTTCCGTTTTCCTGTAGGAATCCTCCGATTCTCCAACCTCACAAATCCCTCTGTCGACCACTCTTCCCTCCTTGCCCTCTCCACCCCTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCACAGGTTCTTGTCAAGAATGTTGACACCAACACACAGAAAATTGCACTGGCTATTGCTTTGGATCCACCAGGCACCACGGTTAACACAGAGTCTCCATCTTCTAGTTCTTCTTCTCATTCTTCTCGAATAATGCTTCTTTTTCCTTCTTGTCATTTCCCTTTTAATGGTTCCGTGCTCGATGATCAAATAGCCTATGTATCGCCTCTTTTAGCTTTCAACCTTAACTTGCATGTGACATGCTTAAAATCCGTTCTTCACCACGGGCAAGAGGTTTTGGCTTCTTATTTCGGACCTCGAGAAAAAAGGGGTGATGAGGATGATGCTAAAAGCACCGTGGATTCTGTCATCGACGTGGAATTGGAACCACTTGCACTGCCTCCAAAATTTGCCTCTCTTCTGAGGGTTTCTTTTGTGAAGATACCAGAATGTGGCATCCTCGAATCCATTAGGGCAAGTTCACCTTTTGAGTCAGAAGAGCGGCAAGACATGATCGACTTGTCATTGCAAAAGTACTTTGAAGTCGATAGGTACTTGTCCAAGGGAGATGTTTTTGGGATTAACATAAGTTGGAATTGCAATTCCCCCATTTGCGTTTCTTGTAACCAAAGATCATTAAATCAAAATGACAACCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACAGGTTTTTCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCCCTCCCTCCAGATTTGTTAATTGGTGGACCTGAAGGACCTGCGCCTTTGCGTGGGGACACTGTGAACGTCTTGGCTTCGATACTTACACCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGGGTGTCTGTTCTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTTCTCGACTTGGCCTGCATGTGGTGGAATATAATTGTCATGATCTTATGGTGTCTGATAGAACATCTGTTGCTCTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCACCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGAATCGCAATCGCCTGATGGTTCACCACATGATCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGATCCTGTCAGTGAACAATGTGATAGTAATTCCCTGGGGAAATCAAGCGCTGAATCTGTGGAGAAGAGTTATGAAAAGGCAAGTGGGCATCAGGTTCTATTGATTGCTGCTGCTGACAGTTCAGAAGGTCTGCCGACAACTATCAGACGTTGTTTTAGCCACGAAATAACCATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATTACAGTCATTTCAAAGTTTTTCTGAACTCCTCTCTAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGGGACATGCGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCGAGAAACAATGCTAAAGTAGACAAAGATGTGTCTGATGATGTAGATAGTTCTTTTAATTCCAAGACGGCGGAGGACACCAGTCACAGTAAAGTTTCACATCAGATTCCTGGTAAAGAAGACTTGTTGAATGCTTTGGAGCGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAACGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCTTGCATAAAGATCTATTTTCATCTGGATTACGAAAGCGATCTGGTGTACTTTTGTACGGTCCCCCTGGAACTGGCAAAACGTTATTAGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGTGACATTTTCCAGAAGGCCAGATCGGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTGGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGCGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGACGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCCCTTCTGCGCCCTGGTCGATTTGATAAGCTACTCTATGTGGGAGTTAACTCTGATGCATCTTACAGGGAACGGGTGCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATATCTCACTTTACTCCATTGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCGTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGTAAAGTTTTGAGTGCAAATCCCGAGTCGTCCAACAAAGATAATGAAGCCGACTCTGTTGTTGTTCAATATGATGACTTTGTCCAGGTGTTAGAAGAGCTATCACCTTCCCTCTCGATGGCCGAGCTTAAGAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTTGA	2781	0.4337	MVERRRKPLILCSTKHVINSTAPTTNLFHRDSSPSFFRFPVGILRFSNLTNPSVDHSSLLALSTPLLKTLSITSGSQVLVKNVDTNTQKIALAIALDPPGTTVNTESPSSSSSSHSSRIMLLFPSCHFPFNGSVLDDQIAYVSPLLAFNLNLHVTCLKSVLHHGQEVLASYFGPREKRGDEDDAKSTVDSVIDVELEPLALPPKFASLLRVSFVKIPECGILESIRASSPFESEERQDMIDLSLQKYFEVDRYLSKGDVFGINISWNCNSPICVSCNQRSLNQNDNLICFKVVGMEPSDEQVFRVNNTLTALVLVGSSPSALPPDLLIGGPEGPAPLRGDTVNVLASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVASRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRESQSPDGSPHDQRGNTSEVASVIRKFTDPVSEQCDSNSLGKSSAESVEKSYEKASGHQVLLIAAADSSEGLPTTIRRCFSHEITMGPLTEEQRAEMLLQSFQSFSELLSNTDSEALVKEIVGQTSGYMPRDMRALIADAGANLFPRNNAKVDKDVSDDVDSSFNSKTAEDTSHSKVSHQIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDISLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSNKDNEADSVVVQYDDFVQVLEELSPSLSMAELKKYEQLRDQFEGTS*	927

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g02969	926	PANTHER	AAA-FAMILY ATPASE	58	923	-	-
	Phac1g02969	926	CDD	RecA-like_PEX6_r2	653	812	IPR047533	-
	Phac1g02969	926	FunFam	Peroxisome biogenesis protein 6	335	519	-	-
	Phac1g02969	926	Pfam	ATPase family associated with various cellular activities (AAA)	366	518	IPR003959	GO:0005524\|GO:0016887
	Phac1g02969	926	Pfam	ATPase family associated with various cellular activities (AAA)	681	813	IPR003959	GO:0005524\|GO:0016887
	Phac1g02969	926	Gene3D	-	345	542	IPR027417	-
	Phac1g02969	926	Gene3D	-	639	916	IPR027417	-
	Phac1g02969	926	MobiDBLite	consensus disorder prediction	587	613	-	-
	Phac1g02969	926	SMART	AAA_5	362	522	IPR003593	GO:0016887
	Phac1g02969	926	SMART	AAA_5	677	817	IPR003593	GO:0016887
	Phac1g02969	926	FunFam	Peroxisome biogenesis protein 6	815	901	-	-
	Phac1g02969	926	FunFam	Peroxisomal biogenesis factor 6	639	828	-	-
	Phac1g02969	926	ProSitePatterns	AAA-protein family signature.	784	802	IPR003960	GO:0005524\|GO:0016887
	Phac1g02969	926	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	640	921	IPR027417	-
	Phac1g02969	926	Gene3D	-	815	901	-	-
	Phac1g02969	926	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	359	589	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g02969	Phac-Chr1	38234674	38242121	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g02969	647	881	Calmodulin-binding Proteins	AT3G56690	40.254	2.07e-40	159

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g02969	K13339		-	gmx:100820183	1572.76