Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02935 ATGAGGAGGAGGAGAGAGATGGAGCCTGAACCCAGAGACGGACTTCCCCATAACCGAGGTGCCGGAAATGATTTGTTCACTGAACTGTGGCGTGCATGTGCGGGATATTCCGTTTATGTTCCTCGTGTTGGAGAGTTGGTTTTCTACTTCCCGCAAGGCCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGACACATGGAAATTCCTGTGCATAATTTGCCTTCTAAGATCTTATGCAGGGTTGTGTATGTTGAATTACAGGCCGAAACTTACACTGATGAGGTTTTTGCTCAAGTTACATTAGTTCCGGAGTCCAAGCAAAATAATTTTGATTTAGAGAACGAGGACAATCATGTTCCTTTAAGAACTGCAACCTACTCCTTTAGTAAGGTACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACGCCTGCACAGGAAATTGTTGCGAAGGACTTGCGCGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGTGGTTGGAGCACGTTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTTGTTAGTGGGGAGTCTGGAGAAGTTCGTGTTGGGATTCGTCGGGCAATTAGACATCACAGCAATGCATTCCCGTCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTACTGCTTCCCATGCTGTTGCCACAGGAGGCATCTTCACTGTCTATTACCACCCTTGGAGGAATCCCTTTGAGTTTATCATTCCTCTGGAAAACTATTTGAAGTCAACTGTTCCCGACTATTCAGTTGGAGCGAGAGTACAAATGCAGTGTGATGTTGAAGAGTCTCTAAGAAGATATGCAGGTACGATAATTGGTACTGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATACCGTAGTAGATGCCTTCATGCACCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCATTGGAATCTGCCATGGAGAAGCACTCTCCTGTTCTCCCAAACCCAAAAAAGGCACATCTACTTAACCAGCACCCTTTGCCTGGATTAAGTGTCTTTGCCAGGGATGATGCTGGTCAGAGTTCAGCCAGGGCGGCATCTCAGACTCAGAGAACGGATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGAGTACTTCATGGCCATTGCAAAGACCATCATCGAGTGATGTAATCCACCCATCGAAGTTCTCAATCAGTGGCTCACAATTTGGGAAGGAAAATCTGAACCAGCTCCCCTTTCACATGCAAGACATTCTTCATAAATCTCTTGGAAGATCAACGTCATTGCCACATGAAGACTTGTCAATATCAAGTTCAAATTTAGGCTCCATTTGTTCTGAATCCCTGGGATGGCCGCCTTACGAATCTAGAAATGAAAATGATGCTCCATTTGGTCAACTTGGCAGTTGCAGTAGATACAAGCTTTTTGGAGTTAACTTAATTGACCGCCAACCGGAGCTCCCTTCACAACAACTTGCTGGTTTCAGCAAGACTTCAAGTCTGCTTTCTACTCCTCCAATATCTATTACCTCCGGGAAAACATGTCAGAAGTGTCGCTGTGTCAATCGTAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCTGTTGATCTTGGCCGTTTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCGATGTTTGATTTTGGTGGCAGCTTAGTCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATTATGATGGAGACATGATGCTCTTGCGAGATTATCCATGGCAGGATTTCCAGTGTGTGGTGCAAAAGATGATCATATGTCCGAAGGATGGTATTAACAATCTCAATCCAAGCTCCTCAGCAGATCCTCCAAGCCTTTAG 2022 0.4575 MRRRREMEPEPRDGLPHNRGAGNDLFTELWRACAGYSVYVPRVGELVFYFPQGHLEQVAAFTQHQQDGHMEIPVHNLPSKILCRVVYVELQAETYTDEVFAQVTLVPESKQNNFDLENEDNHVPLRTATYSFSKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDLRGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGESGEVRVGIRRAIRHHSNAFPSSSLISGHSMQLGILATASHAVATGGIFTVYYHPWRNPFEFIIPLENYLKSTVPDYSVGARVQMQCDVEESLRRYAGTIIGTEVIDSIRWPGSEWRCLKVQWDTVVDAFMHPERVCPWWIEPLESAMEKHSPVLPNPKKAHLLNQHPLPGLSVFARDDAGQSSARAASQTQRTDRDLQGQDYSGLSTSWPLQRPSSSDVIHPSKFSISGSQFGKENLNQLPFHMQDILHKSLGRSTSLPHEDLSISSSNLGSICSESLGWPPYESRNENDAPFGQLGSCSRYKLFGVNLIDRQPELPSQQLAGFSKTSSLLSTPPISITSGKTCQKCRCVNRSCTKVLKLGTALGRAVDLGRFRGYDELIAELDSMFDFGGSLVNGSSGWHVTCIDYDGDMMLLRDYPWQDFQCVVQKMIICPKDGINNLNPSSSADPPSL* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02935 673 ProSiteProfiles PB1 domain profile. 574 657 IPR000270 GO:0005515
Phac1g02935 673 Gene3D - 297 371 - -
Phac1g02935 673 SUPERFAMILY CAD & PB1 domains 580 649 - -
Phac1g02935 673 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Phac1g02935 673 Pfam AUX/IAA family 571 653 IPR033389 -
Phac1g02935 673 SUPERFAMILY DNA-binding pseudobarrel domain 127 263 IPR015300 -
Phac1g02935 673 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 660 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac1g02935 673 Gene3D - 570 663 - -
Phac1g02935 673 CDD B3_DNA 131 232 IPR003340 GO:0003677
Phac1g02935 673 Gene3D - 130 234 IPR015300 -
Phac1g02935 673 SMART B3_2 132 234 IPR003340 GO:0003677
Phac1g02935 673 FunFam Auxin response factor 297 369 - -
Phac1g02935 673 MobiDBLite consensus disorder prediction 404 439 - -
Phac1g02935 673 Pfam Auxin response factor 260 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac1g02935 673 MobiDBLite consensus disorder prediction 401 439 - -
Phac1g02935 673 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Phac1g02935 673 FunFam Auxin response factor 130 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02935 Phac-Chr1 38009383 38018239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02935 564 666 B3 DNA Binding Superfamily AT5G62000 45.631 3.48e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac1g02935 AUX_IAA 4.2e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02935 - - gmx:100802387 996.497