Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02928 ATGGCCGAAGGGAAGGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCGTCATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCCGAAGTTGAAATATCTGCACTTTTCTCCAACTATGGAACTATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGACACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCGTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGCACCACACACTGATTCCCAGCACCCGTCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCCTACCGCATGCCACCGATGCAGAGTCAACACGGTTTCCATAATATGATGCCCCACATGAACCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAATTATCATGTGGCTCCTGCAAGTTACGTTGGTTCTTATCCTGCTGTAACAGGTCTACAACATCCCATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCTGGTTCTGTTTCACCTGCTAGTGGAAATAACAACTCTGCTGCATCATCAGGTGGCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATATATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTGATGCTTTTCAACCATTCGGTATAGTCTTGAGTGCTAAAGTTTTTGTGGATAAAGCAACTGGTGCTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATTCCAGTTAGGAGGTAAGAAGTTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1296 0.4514 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSNYGTIKDLQVLRGSQQTSKGCAFLKYDTKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNAPHTDSQHPSLFGALPMSYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYPTGMISPRPMNASPGSVSPASGNNNSAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELADAFQPFGIVLSAKVFVDKATGASKCFGFVSYDSPEAAQSAISMMNGFQLGGKKLKVQLKRDNKQGKPY* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02928 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Phac1g02928 431 PANTHER RNA BINDING PROTEIN 14 425 - -
Phac1g02928 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Phac1g02928 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Phac1g02928 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Phac1g02928 431 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Phac1g02928 431 Gene3D - 101 192 IPR012677 -
Phac1g02928 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Phac1g02928 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Phac1g02928 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Phac1g02928 431 Gene3D - 312 423 IPR012677 -
Phac1g02928 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Phac1g02928 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Phac1g02928 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Phac1g02928 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Phac1g02928 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Phac1g02928 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Phac1g02928 431 MobiDBLite consensus disorder prediction 185 211 - -
Phac1g02928 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Phac1g02928 431 FunFam RNA-binding protein BRN1 2 99 - -
Phac1g02928 431 MobiDBLite consensus disorder prediction 305 341 - -
Phac1g02928 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Phac1g02928 431 Gene3D - 2 100 IPR012677 -
Phac1g02928 431 FunFam RNA-binding protein BRN1 313 423 - -
Phac1g02928 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Phac1g02928 431 MobiDBLite consensus disorder prediction 309 337 - -
Phac1g02928 431 CDD RRM3_CELF1-6 348 420 - -
Phac1g02928 431 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02928 Phac-Chr1 37987326 37993223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02928 345 428 Eukaryotic Initiation Factors Gene Family AT1G71770 36.047 3.57e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02928 K13207 - gmx:100813239 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02928 1 37987326 37993223 Phac1g02928 1 37987326 37993223 ECH