Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02927 ATGCGTGTCACAATAAGAAGACGCTACCCGGGGTTGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCCGAAGTTGAAATATCTGCACTTTTCTCCAACTATGGAACTATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGACACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCGTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGCACCACACACTGATTCCCAGCACCCGTCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCCTACCGCATGCCACCGATGCAGAGTCAACACGGTTTCCATAATATGATGCCCCACATGAACCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAATTATCATGTGGCTCCTGCAAGTTACGTTGGTTCTTATCCTGCTGTAACAGGTCTACAACATCCCATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCTGGTTCTGTTTCACCTGCTAGTGGAAATAACAACTCTGCTGCATCATCAGGTGGCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATATATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTGATGCTTTTCAACCATTCGGTATAGTCTTGAGTGCTAAAGTTTTTGTGGATAAAGCAACTGGTGCTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATTCCAGTTAGGAGGTAAGAAGTTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1080 0.437 MRVTIRRRYPGLASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSNYGTIKDLQVLRGSQQTSKGCAFLKYDTKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNAPHTDSQHPSLFGALPMSYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYPTGMISPRPMNASPGSVSPASGNNNSAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELADAFQPFGIVLSAKVFVDKATGASKCFGFVSYDSPEAAQSAISMMNGFQLGGKKLKVQLKRDNKQGKPY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02927 359 Gene3D - 240 351 IPR012677 -
Phac1g02927 359 MobiDBLite consensus disorder prediction 237 265 - -
Phac1g02927 359 PANTHER RNA BINDING PROTEIN 20 353 - -
Phac1g02927 359 Gene3D - 25 120 IPR012677 -
Phac1g02927 359 FunFam RNA-binding protein BRN1 isoform X1 28 120 - -
Phac1g02927 359 MobiDBLite consensus disorder prediction 113 139 - -
Phac1g02927 359 FunFam RNA-binding protein BRN1 241 351 - -
Phac1g02927 359 MobiDBLite consensus disorder prediction 233 269 - -
Phac1g02927 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 352 IPR000504 GO:0003723
Phac1g02927 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 111 IPR000504 GO:0003723
Phac1g02927 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 96 IPR000504 GO:0003723
Phac1g02927 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 346 IPR000504 GO:0003723
Phac1g02927 359 SUPERFAMILY RNA-binding domain, RBD 31 354 IPR035979 GO:0003676
Phac1g02927 359 CDD RRM3_CELF1-6 276 348 - -
Phac1g02927 359 MobiDBLite consensus disorder prediction 121 136 - -
Phac1g02927 359 SMART rrm1_1 275 348 IPR000504 GO:0003723
Phac1g02927 359 SMART rrm1_1 32 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02927 Phac-Chr1 37987326 37993223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02927 267 349 Eukaryotic Initiation Factors Gene Family AT1G22760 38.554 3.04e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02927 K13207 - gmx:100813239 619.772