Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02907 ATGTCGATATTACCTAGCATGGACATGCCTACCATTGATGTGGACCTTGGGCCGGAGAAGTTTGAAGAGGAGAAGCAAGGAGGCCCCTTGTTGCATTGTGATCTATGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGTCTAGCTAGTGCTTGTGTTGATAACACAACAGGAGATCTCTTCAAAACTGCAGGTTCAGTAGCTGTTGATTTGAGGAAGGAGATGATAGATTATCTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATATTGGAAGGTGATCCAGACGGTGAAGTATCAGACCATCCTTATGATATCATTTCTAATTTAGTTGATGACTTTGCAAGTTCAAAGAGGAATTTGTTAAGTCGGGTTTCAGGATGGCTATTGAGTGAAAAGAGGGAAGATAACATAGAAGATTTTGTTCAAGAGATGGAAGTGAATGGGTTTTGGACACTTGAGAGGAGAGAAAAAATTGCAGAAACTCTATTAAAAAATGTTGACCTTGCAAACTCATATCATTGCAACATGAGTTTTAATTCCGCGGAAGATCTTGCTAATCATATAGATAATTGCAACTTTAGATCTATAATATGTGAAAATGAGGGATGTAATTCTAGATTTTGCGCATCTCATTTGAAGGATCATGATTCAACTTGCCCTTTCAAGATAATTTCATGTGAACAGAAGTGTTCTGCAAACATTATGAGACGCGAGATGGACAGGCATTGTATAACTGTTTGTCCAATGAAGGTTGTAAATTGTCCTTTTTATGCTATTGGTTGTCGGTCAGCTGTTGCACAATGTATGATTGAAAAGCATCGTTCAGATGATATTGATTCTCATTTGTGGCACTACCTTAAAGGGATCTACAAAGAAGCATCTGGAGATGATCTTAACAACCGAGTGGAACAAATTATACAGGCATCATCAAACAACCGTTTAACAGAGGCTCGAGATGTTAGATCTTTGAACTTCATTGTCAAAGATATTGAAGCTAAGTTAGGACCTTTTAAAGTAACTGTTGTGGATAAAAGTAATTTAAAGTCAGTTGACAAGAATGGAGAAGGGGAAGGAGGTGAAAATAATATGAACAACAGTGAAAAGAATACAAATAATTTAGATATGACCAATTCATCAGATAAAGTTGAAGTGAGTGATACAGTGAATACAACACAAAATGAAGATAATAAACCTAGTCATGTTGAAAATGAAGATCATGAAAAGAGGACAGAAACTTCAAATATGATAGATTTATCTGATAATGATAAAACTGACCTCTTGGATGATGACAACAAAGATGTTACAGCTACTAACTTAACACTTAAGGCCAATGAAGAGAATTCTCAAACGAACAATGAAAAAATATCAAATACAGAAGTTAGTGTAAAAGATGAGGGTAGTATAGAGAATAACAAACAAATACTTAATGAAAACAATAAATTCAAAGATAAGGACAACGAGCAAAACATCCATAATTCAGAAATGGAAGTGAAAGGTGATGCAAACAATACTGGCAAGATCAAGGATATCGAAGATGACAACTAA 1566 0.3563 MSILPSMDMPTIDVDLGPEKFEEEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTTGDLFKTAGSVAVDLRKEMIDYLTQRSESFVAESVILEGDPDGEVSDHPYDIISNLVDDFASSKRNLLSRVSGWLLSEKREDNIEDFVQEMEVNGFWTLERREKIAETLLKNVDLANSYHCNMSFNSAEDLANHIDNCNFRSIICENEGCNSRFCASHLKDHDSTCPFKIISCEQKCSANIMRREMDRHCITVCPMKVVNCPFYAIGCRSAVAQCMIEKHRSDDIDSHLWHYLKGIYKEASGDDLNNRVEQIIQASSNNRLTEARDVRSLNFIVKDIEAKLGPFKVTVVDKSNLKSVDKNGEGEGGENNMNNSEKNTNNLDMTNSSDKVEVSDTVNTTQNEDNKPSHVENEDHEKRTETSNMIDLSDNDKTDLLDDDNKDVTATNLTLKANEENSQTNNEKISNTEVSVKDEGSIENNKQILNENNKFKDKDNEQNIHNSEMEVKGDANNTGKIKDIEDDN* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02907 521 MobiDBLite consensus disorder prediction 356 437 - -
Phac1g02907 521 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Phac1g02907 521 MobiDBLite consensus disorder prediction 451 482 - -
Phac1g02907 521 ProSiteProfiles Zinc finger TRAF-type profile. 217 269 IPR001293 GO:0008270
Phac1g02907 521 MobiDBLite consensus disorder prediction 483 501 - -
Phac1g02907 521 SUPERFAMILY TRAF domain-like 209 277 - -
Phac1g02907 521 MobiDBLite consensus disorder prediction 404 437 - -
Phac1g02907 521 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 30 447 - -
Phac1g02907 521 MobiDBLite consensus disorder prediction 365 403 - -
Phac1g02907 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 286 IPR013083 -
Phac1g02907 521 MobiDBLite consensus disorder prediction 451 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02907 Phac-Chr1 37856417 37859702 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g02907 zf-TRAF 5.6e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02907 - - gmx:100799182 753.821