Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02883 ATGCGGAGCTTCAGGATGAGAAACCTGTTGTGCCGTGTAAAGAGAAGAACAAAGAAAACCATTAGAAACAGAAAAACAACCGCAGAAAACTGCATTTCCATATCAAAAGAGCTAGCACGTCTAGTGGAACAACAACATGAAGAAGTTGTTGAGGATGGTTTCAGCATCAAAAGTTCTGCTCCATCACACACTCACGGTGTTCAACCCTTGGGAAATCTCTATCTGAACCCCAGTTCCATTAACTCTAGAGACACCGGCTTAGGTAATCTTCATACCCTTTCGGATGAGCTTGTTCTTGACATGCTCGGGTTTTTGGATGCTTCTTCCTTAGGGGTTTTGGCCGCTGTGAGCAAGTCTTTTTACGTGTTCACCAACCATGAACCCCTTTGGAAGAATCTCGTGTTGGAAAACCTTCTTTCTGGGTTTAAGTACAAAGGGTCTTGGAAATCCACCTATGTTTCTGCCTGTTACCCTTCATTTGGTAACTCCGATATTGCTCTTGGGGGTCTCAAAGTTAGAGACTTTTACTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGGAGAATTTCGGTTGAGGAGTTTGTGCTGAATTTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGGTGCGTTGGGAAATTGGGATAGGGATTATTTGGAAAGATTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGATTACTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTATATTTGTTTGATCCTAAGTTTGCTGAAAAAGTTCCACAATTGGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAAGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCAGACTACAGGTGGATTATTATTGGACCTGCAGGTTCTGGATCCTCTTTCCATGTTGATCCGAATTCGACCTCGGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCACCTGGTGTTCATCCCAGTCCTGATGGGGCCGATGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTGGAAAAAGAAACCAATTGAGTGTGTGTGTAAAGCTGGAGAGCTCATCTTTGTGCCTAGTGGGTGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAATGTCTTGGATTTTCTTAAAAGGCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTACGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCAGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAGAGGAAACTTCCCTTCTGGGATTCTGTCACAGATGCTAATGCAGGAGCTTTCAAGTTCTCTTTCTAG 1536 0.431 MRSFRMRNLLCRVKRRTKKTIRNRKTTAENCISISKELARLVEQQHEEVVEDGFSIKSSAPSHTHGVQPLGNLYLNPSSINSRDTGLGNLHTLSDELVLDMLGFLDASSLGVLAAVSKSFYVFTNHEPLWKNLVLENLLSGFKYKGSWKSTYVSACYPSFGNSDIALGGLKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRRISVEEFVLNFEEPNKPVLLEGCIDNWGALGNWDRDYLERLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPQLGDEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWKKKPIECVCKAGELIFVPSGWWHLVINLEESIAITQNYVSRRNLVNVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEEERKIQQRKLPFWDSVTDANAGAFKFSF* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02883 511 ProSiteProfiles F-box domain profile. 87 133 IPR001810 GO:0005515
Phac1g02883 511 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 87 509 - -
Phac1g02883 511 SUPERFAMILY Clavaminate synthase-like 205 444 - -
Phac1g02883 511 FunFam F-box protein At1g78280 181 431 - -
Phac1g02883 511 SUPERFAMILY F-box domain 83 154 IPR036047 GO:0005515
Phac1g02883 511 Gene3D Cupin 182 431 - -
Phac1g02883 511 SMART cupin_9 277 446 IPR003347 -
Phac1g02883 511 ProSiteProfiles JmjC domain profile. 286 446 IPR003347 -
Phac1g02883 511 Pfam Cupin-like domain 211 429 IPR041667 -
Phac1g02883 511 Gene3D - 81 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02883 Phac-Chr1 37759871 37762783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02883 81 435 Glycosyltransferase AT1G78280 39.560 3.18e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac1g02883 Cupin_8 1.7e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02883 - - gmx:100782241 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02883 1 37759871 37762783 Phac1g02883 1 37759871 37762783 ECH