Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02873 ATGGAAGACAATAAAGAAAGTAAAATGATATCTGCTGCGGCCTTTGTAGAAGGGGGGATTCAGGACTCCTGTGATGATGCTTGCAGCATATGTCTTGAGGATTTTTGTGCAAGTGATCCTTCAACGCTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCGCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCCTACTAGTCAGGAATTGTTTGAGGCAGTACAGCAGGAGAGGAAGTTGAGGGCTATCCCATCAAGAAATGCTACTATTTTTCATCACCCTGCATTTAGTGATTTTGAATTGCAGCACTTGCGCATGAGTCTAAATGATAATGAGCTTCAAGATCGAATTATTCAACATTTAGCTGTTGCTGCAGCGGTGAGGAGAGCAAACCAACTTGGTCGTAGGGCAGGACAACGAGCTCGTTCATCAGCTCATGGTCATCCACAGCCTTTAGTGTTATCTAATCAGACTATAGCACCTGCATTGAGTCCTGATTCAGCTGCTGAAGAGGAAAATGATCAAACGAGAATTCATAATGCAATTCCATCTACCCCAATAAAATCTGAGAGAAATGAAGCATTGCAACAGATCCTGCACGTTCAAACTCAAAGCTCTTCTTCAGCTTCTGGATCTAGCATCATGGCTACAAGTCGCCAAAGAATTTACTCAAATGATAGAGGCTCTACTACTCGCGCATCATCAGTAAACGAAGATAGAGCAGAGCCATCGGAATTCCAGCCACATTCTGATTCGCTGCGGTCCAGACTCAATGCGGTGTCCACGAGATACAAAGAATCAATCTCAAAGAGCGCAAGGGGATGGAAAGAAAGGTTGTTCTGTCGTAGTTGTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGAGAGATGAATGCTGAGATTGCTAGTGTATCCGGATTAAAGGAATCCCGTGAATGTAGTGAAAATAGTAAATCTGAGGGTACTTCTTTGTCTAGTCATATGGAGGAATGTTCCATTCAAGAGGTGAGCAACCAGAACGATGTTGAAGCTAGCGGGGAGACCTCTTCACATGATGACAATACATCATCTGCTTGTTTTGCTACCTCACATTTAAATTGA 1140 0.4333 MEDNKESKMISAAAFVEGGIQDSCDDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKDPTSQELFEAVQQERKLRAIPSRNATIFHHPAFSDFELQHLRMSLNDNELQDRIIQHLAVAAAVRRANQLGRRAGQRARSSAHGHPQPLVLSNQTIAPALSPDSAAEEENDQTRIHNAIPSTPIKSERNEALQQILHVQTQSSSSASGSSIMATSRQRIYSNDRGSTTRASSVNEDRAEPSEFQPHSDSLRSRLNAVSTRYKESISKSARGWKERLFCRSCSMSELGSETRRREMNAEIASVSGLKESRECSENSKSEGTSLSSHMEECSIQEVSNQNDVEASGETSSHDDNTSSACFATSHLN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02873 379 MobiDBLite consensus disorder prediction 146 165 - -
Phac1g02873 379 MobiDBLite consensus disorder prediction 212 249 - -
Phac1g02873 379 MobiDBLite consensus disorder prediction 314 379 - -
Phac1g02873 379 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 77 - -
Phac1g02873 379 SMART ring_2 28 68 IPR001841 -
Phac1g02873 379 MobiDBLite consensus disorder prediction 178 199 - -
Phac1g02873 379 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 6 78 - -
Phac1g02873 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 77 IPR013083 -
Phac1g02873 379 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Phac1g02873 379 MobiDBLite consensus disorder prediction 330 379 - -
Phac1g02873 379 SUPERFAMILY RING/U-box 22 76 - -
Phac1g02873 379 MobiDBLite consensus disorder prediction 212 266 - -
Phac1g02873 379 Pfam Ring finger domain 27 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02873 Phac-Chr1 37700992 37707054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02873 25 76 C3H Transcription Factor Family AT4G00335 46.154 4.18e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02873 K19043 - gmx:100800419 529.635