Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02856 ATGAGCAGCAACAGTGCTATTAATTCCCCTGGATTCCTTGGCTCAAGCAACATCAGTGGCTATAGTTATGGCATAGGAATCTCCGTTGGAATTCTCTTGCTCATCATAACCATCACTCTAACTTCCTACTTCTGCACCAGAACACATGTCTCATTTGCTCCAGCACCTAGGAACAGGAGACTCACCCCGAATGTTCTTCAATCACAGCACTCTATAGTTGATGTAAGTTTAGATGAAGCCACGATTCTGAGTTATCCAACTCTGCTGTACTCTGAAGCCAAGGTCCAGAAGTCTGATTCCACTGCAACATGTTGCTCCATTTGTTTGGCAGATTACAAGGGTACTGATATGCTTCGCATGCTACCTGATTGTGAACACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCAATTCCAACGCCCCTCTCAACTCCTCTGGCTGAAGTGGTTCCATTGGCTAGCAGACAGGATTCATAG 516 0.4535 MSSNSAINSPGFLGSSNISGYSYGIGISVGILLLIITITLTSYFCTRTHVSFAPAPRNRRLTPNVLQSQHSIVDVSLDEATILSYPTLLYSEAKVQKSDSTATCCSICLADYKGTDMLRMLPDCEHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQDS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02856 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Phac1g02856 171 CDD RING-H2_EL5-like 104 147 - -
Phac1g02856 171 SMART ring_2 105 146 IPR001841 -
Phac1g02856 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Phac1g02856 171 Pfam Ring finger domain 105 147 IPR001841 -
Phac1g02856 171 FunFam E3 ubiquitin-protein ligase ATL6 65 152 - -
Phac1g02856 171 SUPERFAMILY RING/U-box 85 152 - -
Phac1g02856 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 161 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02856 Phac-Chr1 37583600 37584806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02856 11 167 C3H Transcription Factor Family AT2G35910 64.151 8.49e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02856 - - gmx:100811799 279.641