Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02855 ATGCCTAGGAGAAAGAAAGTGACACTAAAACTGATAGAGAATTTTGTGGCAAGAAAAGCTCGTTACAAAAGAAATCGAGAAAATTTATTGAAGAAGGTGGAAGATCTTACCACCCTTTGTGATGTGAATGCATGTGTAATCATCTATGGTCCAGGAGATAACGTGCCAACTGTGTGGCCATCCCATGAGATTGCTAACGAGTTGCTCCACAAGTTTGAGAATGCCCCATTGCCAGATCGGGTAAGAAAAAATGTTACCCCACAAGTTTATATTGAGCAGATGAATAAAAAGATTGAAAATCAACTCGCGAAACTCAAGAAGAAGAACGATGAGAAAGACATGTCAAATTTCATGCATAAAATACATGATGGTAAGTCTTTATCAGATCTTGATGCTAGTGATATATGTCGTTTACTTTGTTATGTGGAGGGAAAACTGAAGTGTGCTGGAGGAAAAGTTGACATTTCTAAACAACAGTCATCAACTAAACCTCCAACGCCACTACTTTCTTTTCCTCTGCAGAATGATATTGATTCTTGTGCTAACATAGATGAACAAGTTGTTCCACAACAATCATCCTTAGATTCAATGAAAGAAACTGGTCCAGTGAAAAGTGATTCTGATAATAATATGGCCAGCAATACGGGACTTCCACCACTACAACCACAACCACAAACACATCTTAGTGATGATAATATGGCGTTGTCTCAAATTAATTTTGAAAGTTTGAATTTGGATGATATTGATATGGTGTTACCTTCAGGAAATTTTAATGATGTGATTGATGATAATGACTTAGGGTTTGGGATGTTGCCTCAAGATAATTTTATAGGTCTTTGTGATAATGGTGATTTAGGGCCATTTTATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATGGTCATCTTATGGAAGTTTTGGAGACATAAGTGAGAGTGATATGATGTTGCCCTTCAACAATAATGTGCAAGACAACACTAATGGAACTTCCATGGGAACAGATGTTGAAAATCAAGCACTTCGCCTTCCATCGTGA 1041 0.3737 MPRRKKVTLKLIENFVARKARYKRNRENLLKKVEDLTTLCDVNACVIIYGPGDNVPTVWPSHEIANELLHKFENAPLPDRVRKNVTPQVYIEQMNKKIENQLAKLKKKNDEKDMSNFMHKIHDGKSLSDLDASDICRLLCYVEGKLKCAGGKVDISKQQSSTKPPTPLLSFPLQNDIDSCANIDEQVVPQQSSLDSMKETGPVKSDSDNNMASNTGLPPLQPQPQTHLSDDNMALSQINFESLNLDDIDMVLPSGNFNDVIDDNDLGFGMLPQDNFIGLCDNGDLGPFYGSSSGEITGNDIWSSYGSFGDISESDMMLPFNNNVQDNTNGTSMGTDVENQALRLPS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02855 346 Coils Coil 12 39 - -
Phac1g02855 346 MobiDBLite consensus disorder prediction 325 339 - -
Phac1g02855 346 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Phac1g02855 346 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Phac1g02855 346 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Phac1g02855 346 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Phac1g02855 346 CDD MADS_SRF_like 4 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac1g02855 346 Coils Coil 91 115 - -
Phac1g02855 346 MobiDBLite consensus disorder prediction 325 346 - -
Phac1g02855 346 Gene3D - 16 124 IPR036879 GO:0003677|GO:0046983
Phac1g02855 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 55 IPR002100 GO:0003677|GO:0046983
Phac1g02855 346 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Phac1g02855 346 SUPERFAMILY SRF-like 4 91 IPR036879 GO:0003677|GO:0046983
Phac1g02855 346 MobiDBLite consensus disorder prediction 188 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02855 Phac-Chr1 37573759 37575557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02855 4 170 Type I MADS-box Gene Family AT1G65300 30.588 1.43e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac1g02855 SRF-TF 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02855 - - var:108328520 535.028