Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02853 ATGGCGATGCAAACTGTTTATTTTAAAGAACATGAAGGAAATGCACCCAATTTTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCAAGTGGGTGAGTCTTGTGTACAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAGACCAACATGCTGCCAATAAGCCTTCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCCCATTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCGCGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGAGGTCGCTTCTTGAACACAAGAAAATCTGCTAATGGAAATGGCAAAACTGGAAATGAAGTGCATGAAACTGTAGGTGAACGATTGCATTCCAGTGGTTCTCAGAGTTCCGAATTCCTTCAGTCTGAGGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCGGGCTCAGAAGTGACTAGCATGTATTCACGTGGAGGTCTTGAAAGATTTTCCCTCAATCATTTTGGATCTTCTGTGCACACCCTGGTAGACATGATAGATGGTGGGCGTGGTATGATCATACCCACCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 993 0.4441 MAMQTVYFKEHEGNAPNFVGALSSAASAPWWSAFGSQPVQVGESCVQMKPFSLELPNCIDQHAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSANGNGKTGNEVHETVGERLHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLERFSLNHFGSSVHTLVDMIDGGRGMIIPTKWAAAAGNCCNLKV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02853 330 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Phac1g02853 330 MobiDBLite consensus disorder prediction 241 279 - -
Phac1g02853 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Phac1g02853 330 MobiDBLite consensus disorder prediction 209 279 - -
Phac1g02853 330 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Phac1g02853 330 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Phac1g02853 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 64 283 IPR001289 GO:0003700|GO:0006355
Phac1g02853 330 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Phac1g02853 330 Gene3D - 160 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02853 Phac-Chr1 37553895 37559589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02853 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.667 7.85e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phac1g02853 CBFB_NFYA 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02853 K08064 - gmx:100527677 578.17