Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02850 ATGGCTGCTGCAGCTTCTTTTTCCTCCTCTATCTGCAACAGAATATACAATCTTTCCCTCACCCACTCTTCCGTTTCACTCACCTCCAACTTCCTTCAGAGACCCATTTTCCAAAAACAACTCAATCTTAACCTCAAGTCCCAAAGCTTCAGTCTTTCATTTCTCCCACTTCATCGTCTGTCCCCACCTTCCGCCACCTTCGATGGGCTGGAAGTGGGTCAAGACATAACAGAGTCCCGACAAGACGAACCAGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGAAGAGCGAAAGGTTTCAGACTACGATAACGATGCTGGGAGGCTCTATATTGGAAACTTGCCATTTTCAATTACTAATTCCCAATTGGCAGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGAGATTGTGTATGATCGTGTCACGGGTAGAAGCAGGGGATTTGCATTTGTTACAATGGAAAGTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGATTGGTAATGGGGGCAAAAATAAGGAACAACTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATTGTGGAAACCTTGGCTGGGGAGTCAACTCACAGGGTCTTAGAGAAGCTTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAGGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTCGGGTTTGTTTCTTTTACAACTGCCGAGTCTGCAGCAGCTGCCTTGGACATTATGAATGGTGTGGAAGTACAAGGTCGCCCATTGCGGTTGAATATAGCTGAAACAAGGACACCACCATCTCCTCCAGTAATTGAGGAAAACGCAGGAAGCAATGCTGAAAGCTCGGAATTGGTCTCAAGTGCCAGAACATAA 954 0.4665 MAAAASFSSSICNRIYNLSLTHSSVSLTSNFLQRPIFQKQLNLNLKSQSFSLSFLPLHRLSPPSATFDGLEVGQDITESRQDEPVTETSEKTEQEEERKVSDYDNDAGRLYIGNLPFSITNSQLAELFGEAGTVASVEIVYDRVTGRSRGFAFVTMESVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKIRNNYRGFVDSPHKIYCGNLGWGVNSQGLREAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDIMNGVEVQGRPLRLNIAETRTPPSPPVIEENAGSNAESSELVSSART* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02850 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Phac1g02850 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Phac1g02850 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Phac1g02850 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Phac1g02850 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Phac1g02850 317 CDD RRM2_NsCP33_like 212 287 - -
Phac1g02850 317 MobiDBLite consensus disorder prediction 287 317 - -
Phac1g02850 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Phac1g02850 317 MobiDBLite consensus disorder prediction 77 102 - -
Phac1g02850 317 MobiDBLite consensus disorder prediction 301 317 - -
Phac1g02850 317 SUPERFAMILY RNA-binding domain, RBD 102 185 IPR035979 GO:0003676
Phac1g02850 317 Gene3D - 69 191 IPR012677 -
Phac1g02850 317 Gene3D - 198 294 IPR012677 -
Phac1g02850 317 PANTHER OS02G0815200 PROTEIN 44 291 - -
Phac1g02850 317 FunFam 33 kDa ribonucleoprotein, chloroplastic 193 297 - -
Phac1g02850 317 CDD RRM1_PSRP2_like 109 188 - -
Phac1g02850 317 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02850 Phac-Chr1 37548524 37552189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02850 95 290 Eukaryotic Initiation Factors Gene Family AT3G16380 34.000 5.73e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02850 - - gmx:100814852 506.138