Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02842 ATGGACAACGACATCGATGTTCCTTCATTCTTCCTCTGCCCCATTTCTTTACAAATCATGAAGGATCCGGTCACGGTTTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACGTGGCTCTTTTCTAGGAAAAATACTACATGCCCTATCACCAAACAACCCTTGTCAGATTACACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATCCAAGCCTGGTGTACAATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCAAAACCTCCTGTTAACAAGACTCAGATTTCGAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCACATGCCTCCGAAGACTCAAATCCATCGCTTCGGGAAGCGAGACAAATAAGCGATGCATGGAAGCTGCGGGTGCTGTTGAGTTCCTAGCATCGATTGTAGTCAACAACAACAACAACGATTCTTCAAATGGCGCTGACCCAAATGATGGATCTGGATTCGAGTTGAAAACAACTGCAAGCGATGAAGCATTGAGCCTGCTTCACACTCTTGATTTATCTGAACAAGGGTTAAAGACTCTTCTTAGCTTCAGAAACGGAGACTTCATTGAGTCTTTGACGAGAGTCATGCAGAAGGGGTTCTTCGAATCACGCGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATCCAGTGAAACTGTTGCATCTAAGACAAGAACTTTTCGTGGAACTAGTACAAGTCTTGAAGGATCAGATTTCAACAAAGACATCAAAGGATATCATTCAAACCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAGGCTGTGGAAGCCGGAACAGTTCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGATAGAAAGCCTTGTGAGATGATGCTGGTGCTGTTGGAGATACTGTGCCAGTGTGCCGAAGGAAGAGCAGAACTATTGAGTCACGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATTTTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTTTGTGTTTCCAAGTTCTCTGCGACTCCACATGTTGTTCAAGAGATGCTGAAACTGGGTGTGGTGGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGAAACAAGGCCAAGGAAAAGGCGAGAGAGATACTCAAATTGCATGCTCGGGTGTGGAAGAATACTCCATGCATACCCAACAATATGCTTTCTTCATACCCGGCTTATGCGTGA 1260 0.4563 MDNDIDVPSFFLCPISLQIMKDPVTVSTGITYDRESIETWLFSRKNTTCPITKQPLSDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKTQISKLLKDASHSPLTCLRRLKSIASGSETNKRCMEAAGAVEFLASIVVNNNNNDSSNGADPNDGSGFELKTTASDEALSLLHTLDLSEQGLKTLLSFRNGDFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVKLLHLRQELFVELVQVLKDQISTKTSKDIIQTLIQFSPWGRNRIKAVEAGTVPVLIELLLDCKDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLCVSKFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARVWKNTPCIPNNMLSSYPAYA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02842 419 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Phac1g02842 419 CDD RING-Ubox_PUB 8 58 IPR045210 -
Phac1g02842 419 SUPERFAMILY ARM repeat 113 388 IPR016024 -
Phac1g02842 419 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Phac1g02842 419 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
Phac1g02842 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Phac1g02842 419 Gene3D - 99 404 IPR011989 -
Phac1g02842 419 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Phac1g02842 419 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Phac1g02842 419 SUPERFAMILY RING/U-box 5 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02842 Phac-Chr1 37451282 37452991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02842 1 417 U-box Gene Family AT3G52450 58.257 9.47e-177 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02842 - - gmx:100811258 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02842 1 37451282 37452991 Phac1g02842 1 37451282 37452991 ECH