Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02794 ATGTCGATAAACCACTACTCACCGGAAGCCAGACTATACTGGAGCGAGCAACAACAAGCCTCCACGTGGCTGGGAAACTCTCACACTCCTCGTTTCAACCTGAACGACAACCAGGAGGAGGTGGAGGAGGAGGAAGAGGAGGTGGTGGCGGCGGCGGCGGAGAACGGTGGTGGTGGGGCGGCGGAAGAGGAGAAGGAAACGATGTTCGAGAAGCCGCTAACGCCGAGCGATGTGGGGAAACTGAACCGGTTGGTGATCCCGAAACAGCACGCGGAGAAGCACTTCCCGCTGGAGTCTTCGTCGTCGTCGTCTTCGTGTGGTGACAGCGCGAAAGGTGTGTTACTGAGTTTCGAGGACGAGTCCGGTAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTATGTCAAGGACAAACGCCTCCACGCTGGCGACGTCGTTTTCTTCCACAGACACCGAACCCATCCCCAACGGTTCTTCATCACCTCCACCCGCCGCCAACCGAACCCACCCGCTCACGTTAATTCCACCGCCACACCTTCCTTCTACTCTGCGCAGCCTTATCCTGCGCATCACCTCCCTTTCCCATACCAACCTCTCTCTCTTCATGCACCACCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTCATAATGATTCCCAAAACTCCACGCCACAATGCTCTTACACTCTCTCCTCAACGCTTTCCCACCACCACTTACACCGTCAAACCTCTTACTCTTCTTCTTCCCCAAACCCTCACCATCACATGCTACGTCAACAACCATAA 894 0.5537 MSINHYSPEARLYWSEQQQASTWLGNSHTPRFNLNDNQEEVEEEEEEVVAAAAENGGGGAAEEEKETMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFITSTRRQPNPPAHVNSTATPSFYSAQPYPAHHLPFPYQPLSLHAPPGGGSQGQNQTTPGGNSSGGRVLRLFGVNMECQPHNDSQNSTPQCSYTLSSTLSHHHLHRQTSYSSSSPNPHHHMLRQQP* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02794 297 CDD B3_DNA 68 166 IPR003340 GO:0003677
Phac1g02794 297 Pfam B3 DNA binding domain 69 173 IPR003340 GO:0003677
Phac1g02794 297 MobiDBLite consensus disorder prediction 24 64 - -
Phac1g02794 297 ProSiteProfiles B3 DNA-binding domain profile. 69 179 IPR003340 GO:0003677
Phac1g02794 297 SMART B3_2 69 177 IPR003340 GO:0003677
Phac1g02794 297 Gene3D - 57 185 IPR015300 -
Phac1g02794 297 SUPERFAMILY DNA-binding pseudobarrel domain 65 177 IPR015300 -
Phac1g02794 297 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 259 IPR044800 GO:0003700
Phac1g02794 297 MobiDBLite consensus disorder prediction 219 235 - -
Phac1g02794 297 Coils Coil 34 55 - -
Phac1g02794 297 MobiDBLite consensus disorder prediction 209 239 - -
Phac1g02794 297 MobiDBLite consensus disorder prediction 270 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02794 Phac-Chr1 37041377 37042622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02794 62 268 RAV Transcription Factor Family AT5G06250 50.685 1.49e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac1g02794 B3 7.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02794 K09287 - gmx:100802734 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02794 1 37041377 37042622 Phac1g02794 1 37041377 37042622 ECH