Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02791 ATGCCATGCAACATAAACTCTTCATTTCCCTGGTTCACTGTCTGCAACATCGAATTGAATTCCATGGCGGCTGTGAGAAAAATAATTCAGGTCAACAAAAATAAAACCTTTGCGCCATCTCTTTTAGCTTTTCGCCGAAGAATTGCTTACAAGCTTTTTGTTGGAGGACTGTCCTTCTACACCACAGAGAAAGCATTGTCAGATGCATTTTCCAACTACGGGCAAGTTATTGAAGCAAAAGTTGTAACAGATAGAGTGTCAGACAAATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCACCAGACGAGGCTGAGAATGCCATAACACAGATGAAAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAGCCCAATATCACCGGTAATGGTACGATGCCAATTGCCAGAGGACCTCCCGAACCAACACCAGACACTTGA 450 0.42 MPCNINSSFPWFTVCNIELNSMAAVRKIIQVNKNKTFAPSLLAFRRRIAYKLFVGGLSFYTTEKALSDAFSNYGQVIEAKVVTDRVSDKSKGFGFVTFASPDEAENAITQMKGKTLNGRVIFVDYAKPNITGNGTMPIARGPPEPTPDT* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02791 149 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 47 135 - -
Phac1g02791 149 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
Phac1g02791 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Phac1g02791 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Phac1g02791 149 Gene3D - 30 143 IPR012677 -
Phac1g02791 149 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02791 Phac-Chr1 37017651 37019201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02791 52 127 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 4.92e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02791 - - pvu:PHAVU_001G192800g 285.804