Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02768 ATGCAAAAAATGCCTGGGACAGGGCAGAGAGATGTAGTGGTAAAAAATCCAGAGTCACCAGAGGGAAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGACTAAGCCTTCAGATGGTGAAGATGAGACAAGAGTGACACACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCCCCTCATGGGTCAGAGGTATACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAAGGTATTTTGTCAATCTGTGGGAGAAGTTTCGGAGGTTAGGATAATGAAGGGCAAAGAATCCGGTGAAGCAAAAGGCTATGCTTTTGTGACCTTCAGGACAAAGGAATTGGCATGTAAGGCTATTAAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAAGCACCGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAAGAAAGTTGTTGCAGAGATTGGTCCTGGAGTCATTTCTGTGGAACTGATGAAGGACCCACAGATTTCTGGTCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAACCTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTACAAACTCTCAGGTAAAATCATTGTATGTAAAGAATCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCAGCTAAAGCCGGCCAAGAAATGAGCAGATATGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGTCATGAAGGCATTGAAGAACACAGAGAAATATGAAATTGATGGGCAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCAGATCAGAAGTCATCTGGGGTAGCAAATCAACAGAAGTCAGCCTTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCTTACGGTGCTATAGGTGCAGGGTATGGTGCTGCTGGCTTTGCACAACCGTTGATGTATGGTCCTGGACCAACCCCTCCTGGCATGACAATGATACCGATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGCCTGCTCCAATGCTGGAATCCCAACATGGGAGGAGTGGCAGCGGTAGTTCAAGCAGTGGGAAGCGCAATAATGATAATAACCGCAATCGTGGGTATGGCCGATATCATCCCTACTAA 1467 0.4376 MQKMPGTGQRDVVVKNPESPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEEEEEEEEEEEEEEEEETKPSDGEDETRVTHTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLKVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFRTKELACKAIKELNNSEFKGKRIKCSTSQAKHRLFIGNVPRNWTEENMKKVVAEIGPGVISVELMKDPQISGRNRGFAFIEYYNNACAEYSRQKMSNSTFKLGSNAPTVSWADPRNYESSTNSQVKSLYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEMSRYGFVHFAERSSVMKALKNTEKYEIDGQTLECSLAKPQADQKSSGVANQQKSALLPTYPPHLGYGMVGGAYGAIGAGYGAAGFAQPLMYGPGPTPPGMTMIPMLLPDGRIGYVLQQPGFQQPAPMLESQHGRSGSGSSSSGKRNNDNNRNRGYGRYHPY* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02768 488 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 23 480 - -
Phac1g02768 488 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 195 275 - -
Phac1g02768 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Phac1g02768 488 Coils Coil 41 83 - -
Phac1g02768 488 Gene3D - 32 194 IPR012677 -
Phac1g02768 488 MobiDBLite consensus disorder prediction 21 35 - -
Phac1g02768 488 MobiDBLite consensus disorder prediction 450 488 - -
Phac1g02768 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 263 IPR000504 GO:0003723
Phac1g02768 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 359 IPR000504 GO:0003723
Phac1g02768 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 186 IPR000504 GO:0003723
Phac1g02768 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 366 IPR000504 GO:0003723
Phac1g02768 488 MobiDBLite consensus disorder prediction 86 104 - -
Phac1g02768 488 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 277 386 - -
Phac1g02768 488 FunFam RNA recognition motif-containing protein 30 194 - -
Phac1g02768 488 MobiDBLite consensus disorder prediction 36 85 - -
Phac1g02768 488 CDD RRM_SF 116 188 - -
Phac1g02768 488 SUPERFAMILY RNA-binding domain, RBD 194 367 IPR035979 GO:0003676
Phac1g02768 488 Gene3D - 277 400 IPR012677 -
Phac1g02768 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 276 IPR000504 GO:0003723
Phac1g02768 488 Gene3D - 195 275 IPR012677 -
Phac1g02768 488 MobiDBLite consensus disorder prediction 450 476 - -
Phac1g02768 488 SUPERFAMILY RNA-binding domain, RBD 110 193 IPR035979 GO:0003676
Phac1g02768 488 SMART rrm1_1 195 272 IPR000504 GO:0003723
Phac1g02768 488 SMART rrm1_1 115 188 IPR000504 GO:0003723
Phac1g02768 488 SMART rrm1_1 289 362 IPR000504 GO:0003723
Phac1g02768 488 SMART rrm2_1 115 188 IPR003954 GO:0003676
Phac1g02768 488 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02768 Phac-Chr1 36845903 36853112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02768 116 453 Eukaryotic Initiation Factors Gene Family AT2G23350 24.865 9.67e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02768 K13161 - gmx:100798476 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02768 1 36845903 36853112 Phac1g02768 1 36845903 36853112 ECH