Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02701 ATGAATATGGAGAGCACGCGCAGATCGCTGGATAGATCGAGAGAGCCGGGTCCCAAGAAGCCTCGATTGATCGAGGAACTCAGTGCCCGACAGTTACCTCAACGACAGCAAGGGTCTGGGGCAGTTGCTTCGGGGGTGTCTGCGAGGGTTAGGGTAAATGACAGGGACTCCGAAAGCAGCGATTCGGGTCGCGGCGGTGGGTACCACCCGCAGTCTCCCCCTCACAATGAGCTTGTGGCTCAGTATAGGACCGCGCTTGCTGAGCTTACTTTCAATTCGAAGCCGATAATCACGAACTTGACTATTATTGCCGGGGAGAACCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTTTGTGCTAACATTATAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAATATTTTGCTGTCAGACTACCTGAGGTATTCTGTAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCGGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTCCAACAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAAACTCAAATGAGGAGTCAGAGAGGCCAGAGAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACGCACACAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCACGAAAAACCATGGTTCAAAACAGATGGCGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTTTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGGAAGCACATCGTCAGCCAAGACAAAGTATAAATAACATACGGAACAATGTGATGTCAGGTAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACACTGGTTTGACTGATCATGGACCCAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACGCCCTTATGGGGCAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCACCACACAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGATGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAATTCTTTACCTGTCAAGAAGGGGAACCAATCTTTTACGTCAAAGGCAGTAGTAGGAATGGCCAAAATTGTAGGGCAGCAATTTGATGGGGAGATTGAATCCCCTTCTGGGCAATCACCTTTGCAACGACAGTCTCCATCACTGCCAGGAACAGCATACCACCCTCATTCAATGCAAAATTTGCCCGAGCAAGAAATGCCCCAGAATATAAGAACATCTCAATTTTTGGGAGGTCCAACAAGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCATTGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCCCATTATCTTCTGCAACTATTCAACCAAAGCTTCAGCAACAGCAGCTCGACATTTCTCAGACTGAAGTTTCTGCTAAAACTAAGCTGCCCCAGTCTAAAACTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAAAATAATTTGTCATCTGCAGCTGTGAAGAGTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCCGGGGTTCAGCTTCCTCAGTCTGGTAGGTCTTCTCCTACCACAATAATTTCTTCAGGGTCTGCAGTGGCATCACCATCTTTATTAGATCCTCTGCATAAAGATTCGTCTTCAGTGCCAAAAAAACCTCAAAGAAAGGCTGGACAACCACCACAGAAGCTTTCTACTCAACCACTTGCTTCTTCTAATTTGAATGCTGCCAAAAATAATGTAAATCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACCGACTATGGTACCAAGCGAAGTGCTGAAGGGATCCAAAGATAAAGCTGCAAACATTAGCACCAGTAGCTCAATCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGTATCATCTGCCAGAGATGAGGTTGACGCCGCAGCAAAATCCTCTCTTCACTCGGCTCAATCTACTAGCACAAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTTATTCGAGAATTCCATGAACCGGTGATTAGGGAATTATTGGATGATCTCCCTCATCATTGCAAAATTTGCGGTATTAGGTTTAAACAAGAAGAACAGTATCAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAAGTATCCAGAAGTTGGTATCCTAAGTCAGGTGATTGGATTGCTGGCAAGGTAGAAGAATATTCATCTGAGTTTGAGTTTGCTGACTCGGTTGTTGTAGACAACCAAGAAACAGACAGCAGTCAATTGGATATGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCAAGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTGTATATGAACTACTCGGATATCAATAGTGAGATGGAAAGTAGAAATGCGGGTCCCATCATTCATGCCAAATGCTTATCCGAGAACTCAATTGTCACCAATTTGGATAGTGATTAA 3081 0.4398 MNMESTRRSLDRSREPGPKKPRLIEELSARQLPQRQQGSGAVASGVSARVRVNDRDSESSDSGRGGGYHPQSPPHNELVAQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLNSNEESERPERALGASRPWLDPRINMLNNQHAHRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGHEKPWFKTDGGDAETISGQKNGFSLKRSFSNREAPKSINLEAHRQPRQSINNIRNNVMSGNWKNSEEEEFTWDEMNTGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILRPYGAKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLNLKPGYSDGFVSTISGLPANANSLPVKKGNQSFTSKAVVGMAKIVGQQFDGEIESPSGQSPLQRQSPSLPGTAYHPHSMQNLPEQEMPQNIRTSQFLGGPTSQHIRDRSPTLHPIVQVGNMRRTQEKDMQGPLSSATIQPKLQQQQLDISQTEVSAKTKLPQSKTSLTKEVSEQSTKNNLSSAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPQSGRSSPTTIISSGSAVASPSLLDPLHKDSSSVPKKPQRKAGQPPQKLSTQPLASSNLNAAKNNVNPIANLLSSLVAKGLISAETESPTMVPSEVLKGSKDKAANISTSSSIPVTSVSDSAAVPVSSARDEVDAAAKSSLHSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDLPHHCKICGIRFKQEEQYQRHLEWHATREHGPIKVSRSWYPKSGDWIAGKVEEYSSEFEFADSVVVDNQETDSSQLDMMIRADENQCLCVLCGELFEDVYCQERNEWMFKGAVYMNYSDINSEMESRNAGPIIHAKCLSENSIVTNLDSD* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02701 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 881 901 IPR013087 -
Phac1g02701 1026 ProSiteProfiles Zinc finger C2H2 type domain profile. 879 906 IPR013087 -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 537 566 - -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 639 751 - -
Phac1g02701 1026 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 538 566 - -
Phac1g02701 1026 Gene3D - 70 199 IPR008942 -
Phac1g02701 1026 CDD CID_Pcf11 79 189 IPR047415 -
Phac1g02701 1026 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 1 26 - -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 214 251 - -
Phac1g02701 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 1017 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Phac1g02701 1026 MobiDBLite consensus disorder prediction 687 718 - -
Phac1g02701 1026 SMART 558neu5 77 199 IPR006569 -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 1 75 - -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 579 594 - -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 639 671 - -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 235 249 - -
Phac1g02701 1026 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Phac1g02701 1026 Pfam CID domain 84 192 IPR006569 -
Phac1g02701 1026 MobiDBLite consensus disorder prediction 579 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02701 Phac-Chr1 36318858 36325261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02701 31 414 C2H2 Transcription Factor Family AT4G04885 36.410 3.57e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g02701 CID 3.5e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02701 K14400 - gmx:100788958 1603.57