Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02700 ATGAATATGGAGAGCACGCGCAGATCGCTGGATAGATCGAGAGAGCCGGGTCCCAAGAAGCCTCGATTGATCGAGGAACTCAGTGCCCGACAGTTACCTCAACGACAGCAAGGGTCTGGGGCAGTTGCTTCGGGGGTGTCTGCGAGGGTTAGGGTAAATGACAGGGACTCCGAAAGCAGCGATTCGGGTCGCGGCGGTGGGTACCACCCGCAGTCTCCCCCTCACAATGAGCTTGTGGCTCAGTATAGGACCGCGCTTGCTGAGCTTACTTTCAATTCGAAGCCGATAATCACGAACTTGACTATTATTGCCGGGGAGAACCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTTTGTGCTAACATTATAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAATATTTTGCTGTCAGACTACCTGAGGTATTCTGTAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCGGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTCCAACAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAAACTCAAATGAGGAGTCAGAGAGGCCAGAGAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACGCACACAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCACGAAAAACCATGGTTCAAAACAGATGGCGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACACTGGTTTGACTGATCATGGACCCAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACGCCCTTATGGGGCAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCACCACACAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGATGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAATTCTTTACCTGTCAAGAAGGGGAACCAATCTTTTACGTCAAAGGCAGTAGTAGGAATGGCCAAAATTGTAGGGCAGCAATTTGATGGGGAGATTGAATCCCCTTCTGGGCAATCACCTTTGCAACGACAGTCTCCATCACTGCCAGGAACAGCATACCACCCTCATTCAATGCAAAATTTGCCCGAGCAAGAAATGCCCCAGAATATAAGAACATCTCAATTTTTGGGAGGTCCAACAAGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCATTGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCCCATTATCTTCTGCAACTATTCAACCAAAGCTTCAGCAACAGCAGCTCGACATTTCTCAGACTGAAGTTTCTGCTAAAACTAAGCTGCCCCAGTCTAAAACTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAAAATAATTTGTCATCTGCAGCTGTGAAGAGTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCCGGGGTTCAGCTTCCTCAGTCTGGTAGGTCTTCTCCTACCACAATAATTTCTTCAGGGTCTGCAGTGGCATCACCATCTTTATTAGATCCTCTGCATAAAGATTCGTCTTCAGTGCCAAAAAAACCTCAAAGAAAGGCTGGACAACCACCACAGAAGCTTTCTACTCAACCACTTGCTTCTTCTAATTTGAATGCTGCCAAAAATAATGTAAATCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACCGACTATGGTACCAAGCGAAGTGCTGAAGGGATCCAAAGATAAAGCTGCAAACATTAGCACCAGTAGCTCAATCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGTATCATCTGCCAGAGATGAGGTTGACGCCGCAGCAAAATCCTCTCTTCACTCGGCTCAATCTACTAGCACAAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTTATTCGAGAATTCCATGAACCGGTGATTAGGGAATTATTGGATGATCTCCCTCATCATTGCAAAATTTGCGGTATTAGGTTTAAACAAGAAGAACAGTATCAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAAGTATCCAGAAGTTGGTATCCTAAGTCAGGTGATTGGATTGCTGGCAAGGTAGAAGAATATTCATCTGAGTTTGAGTTTGCTGACTCGGTTGTTGTAGACAACCAAGAAACAGACAGCAGTCAATTGGATATGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCAAGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTGTATATGAACTACTCGGATATCAATAGTGAGATGGAAAGTAGAAATGCGGGTCCCATCATTCATGCCAAATGCTTATCCGAGAACTCAATTGTCACCAATTTGGATAGTGATTAA 2967 0.4419 MNMESTRRSLDRSREPGPKKPRLIEELSARQLPQRQQGSGAVASGVSARVRVNDRDSESSDSGRGGGYHPQSPPHNELVAQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLNSNEESERPERALGASRPWLDPRINMLNNQHAHRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGHEKPWFKTDGGDAETISGQKNGNWKNSEEEEFTWDEMNTGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILRPYGAKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLNLKPGYSDGFVSTISGLPANANSLPVKKGNQSFTSKAVVGMAKIVGQQFDGEIESPSGQSPLQRQSPSLPGTAYHPHSMQNLPEQEMPQNIRTSQFLGGPTSQHIRDRSPTLHPIVQVGNMRRTQEKDMQGPLSSATIQPKLQQQQLDISQTEVSAKTKLPQSKTSLTKEVSEQSTKNNLSSAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPQSGRSSPTTIISSGSAVASPSLLDPLHKDSSSVPKKPQRKAGQPPQKLSTQPLASSNLNAAKNNVNPIANLLSSLVAKGLISAETESPTMVPSEVLKGSKDKAANISTSSSIPVTSVSDSAAVPVSSARDEVDAAAKSSLHSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDLPHHCKICGIRFKQEEQYQRHLEWHATREHGPIKVSRSWYPKSGDWIAGKVEEYSSEFEFADSVVVDNQETDSSQLDMMIRADENQCLCVLCGELFEDVYCQERNEWMFKGAVYMNYSDINSEMESRNAGPIIHAKCLSENSIVTNLDSD* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02700 988 ProSiteProfiles Zinc finger C2H2 type domain profile. 841 868 IPR013087 -
Phac1g02700 988 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 541 561 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 601 633 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 541 556 - -
Phac1g02700 988 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 979 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Phac1g02700 988 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Phac1g02700 988 CDD CID_Pcf11 79 189 IPR047415 -
Phac1g02700 988 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Phac1g02700 988 MobiDBLite consensus disorder prediction 1 26 - -
Phac1g02700 988 Pfam CID domain 84 192 IPR006569 -
Phac1g02700 988 Gene3D - 70 199 IPR008942 -
Phac1g02700 988 SMART 558neu5 77 199 IPR006569 -
Phac1g02700 988 MobiDBLite consensus disorder prediction 1 75 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 499 528 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 340 360 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 601 713 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 649 680 - -
Phac1g02700 988 MobiDBLite consensus disorder prediction 500 528 - -
Phac1g02700 988 ProSitePatterns Zinc finger C2H2 type domain signature. 843 863 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02700 Phac-Chr1 36318858 36325261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02700 815 980 C2H2 Transcription Factor Family AT4G04885 36.416 2.15e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g02700 CID 3.3e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02700 K14400 - gmx:100788958 1519.21