Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02695 ATGTCTTCTGCCACAAAGAAAAGCCGTGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGTACCGGACTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGCTGCTGACGTGGCACTTGTTGTGTTCTCCCCCGGAGAGAAGGTCTTCTCCTTCGGTCACCCTAACGTCGACGCCGTGACTGACAGCTACCTCGCACGTCCCCCACCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCACCGCCTGGCCAACGTGTGTGAACTCAACGCGCAGCTCACTCAGATCAACGCCCAATTGGAGGCGGGAAAGCAGCGCGGGGAGGAGCTGAATCGCATGAAGAAGGACTCACAGGCCCAGCAATGGTGGGCTCAGCCCATCGAGGAAATGAGCCCAGCCCAGATGGAGCAGTACAAGGCGTCCTTGGAGGAGCTGAAGAAACTGGTTGCGCGTCTTGCTGAGAGGGCCATGCTTGAGAGTGCAACAAACCAGACTTGTCAGTTTTTTCCTGGGGCTCCTTCCTCTTCCAACTCTTCCAATCTGCTACATCACCCACACCCTCCTCAGGTATTCCCACAACCGCTGATTCAGCCACCCATGCTTCAGAACTTCATGTTTCCTGATGGGAGCATCGTAAGCCACCATGGGTTTAATCACATGGAAGTGGGAGGATATGCACCTGGACCTGCTGGTGTTTTCTTTTGA 747 0.5489 MSSATKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVTDSYLARPPPQDMGTMQFIEAHRLANVCELNAQLTQINAQLEAGKQRGEELNRMKKDSQAQQWWAQPIEEMSPAQMEQYKASLEELKKLVARLAERAMLESATNQTCQFFPGAPSSSNSSNLLHHPHPPQVFPQPLIQPPMLQNFMFPDGSIVSHHGFNHMEVGGYAPGPAGVFF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02695 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Phac1g02695 248 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Phac1g02695 248 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
Phac1g02695 248 Coils Coil 149 169 - -
Phac1g02695 248 Gene3D - 89 182 - -
Phac1g02695 248 PANTHER MADS BOX PROTEIN 11 165 - -
Phac1g02695 248 MobiDBLite consensus disorder prediction 1 22 - -
Phac1g02695 248 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Phac1g02695 248 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Phac1g02695 248 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Phac1g02695 248 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Phac1g02695 248 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Phac1g02695 248 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Phac1g02695 248 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02695 Phac-Chr1 36243858 36244637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02695 5 190 Type I MADS-box Gene Family AT5G60440 52.381 5.99e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac1g02695 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02695 - - gmx:100794751 338.576