Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02661 ATGATGTTTGCTATAGCGATTCTCGCAATCGAGACTAAGAATCATACGTTGCTGAATGGAAAAATGATGAGGGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAGAGCACTATTGGGAACTTGTTTGTCAAGTACATTCCTGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAGAAATATGGGAATATTTTGTCCAGCAAAGTTGTCACGTCTGACGATGGAAAGAGCAAAGGATACGGGTTTGTTCAATTTGAATCGGAGGAATCTTCACATGTTGCTATAGAGAAGCTGAATGGCTCTACTGTTGGTGATAAACAGTTATATGTTGGGAAGTTTGTAAAAAAAAGTGATCGCATTTTGCCTGGCGCGGATGCTAGATATACAAACTTGTACGTGAAGAATTTGGACTTGGATATTACAGAAGCAAAACTGAAGGAGAAGTTTTCCTCTTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACCACAATGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGAAACGAATGGATCACAATTAGGTTCTAAAATTCTGTATGTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGTGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATATTGAAATACAAGGGATCAAACGTTTATGTGAAAAACATTGATGACAATGTAAGTGACGAAGAACTAAGCGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCAAGATGATAAAGGGATAAGTAAAGGATTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTGTATGTTGCCCTTGCTCAGCGGAAAGAGGATAGGAAAGCACAATTGCAGCATCAATACACACAGCAAATAGCAGGACTGGCCGGACCTTCGACTACCATTATCACTGGTGGATATCCTCCTTATTATTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACCTCTTGCATTGAGGCCGGGATGGGGGCCTAATGGCTTTGCATCCCCTGCTAGATCATTTCAACAGTCATCTGTTCCCGCAGTTTCTAACTATAATAGGCAGCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCATCACTGGGTAATACTAACTCAGGTACTTATTTGCAACAAGGCCAGCAGACTTCTCAGTCCATCATGATCTCTCCAAGAGAGTCAAGTTTTCAGCAGAGAACTGGACAGCCTAAGTACATATCCAGTGGACGCAAGCGTGACATGGAAAAAGGATCTGGTTCAAATTCTGGTAGAGGGTGCCAGGGGCCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCCGAGCAGCAAAAAGAGATATTGGGAGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCGGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGTTGGATCTCCTGGAATCGCCGGAGTCTCTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCTAAGACCAAAGTTTCTGGCCCGGACGTACTTCATTCAAATTACCTTTCAGCTGAAGTTGCAGTGAACTGA 1716 0.433 MMFAIAILAIETKNHTLLNGKMMRVMWSRRDPDARKSTIGNLFVKYIPESIDNAGLQDIFKKYGNILSSKVVTSDDGKSKGYGFVQFESEESSHVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGADARYTNLYVKNLDLDITEAKLKEKFSSFGKIVSLAIAKDHNGMPKGFGFVNYDNPDDAKKAMEETNGSQLGSKILYVARAQKKAERVQILHHQFEEKRKEQILKYKGSNVYVKNIDDNVSDEELSDHFSACGTITSAKVMQDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQHQYTQQIAGLAGPSTTIITGGYPPYYYAATGVISHVPPRAGLMYQPLALRPGWGPNGFASPARSFQQSSVPAVSNYNRQHRQNRGRLNGHSASLGNTNSGTYLQQGQQTSQSIMISPRESSFQQRTGQPKYISSGRKRDMEKGSGSNSGRGCQGPEMLHSLLAGAAPEQQKEILGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLDLLESPESLSAKVEEAVQVLKNSKTKVSGPDVLHSNYLSAEVAVN* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02661 571 MobiDBLite consensus disorder prediction 403 451 - -
Phac1g02661 571 SMART poly_2 486 549 IPR002004 GO:0003723
Phac1g02661 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 208 IPR000504 GO:0003723
Phac1g02661 571 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 6 547 IPR006515 GO:0003723
Phac1g02661 571 FunFam Polyadenylate-binding protein 217 325 - -
Phac1g02661 571 CDD RRM4_I_PABPs 233 311 - -
Phac1g02661 571 MobiDBLite consensus disorder prediction 403 472 - -
Phac1g02661 571 Gene3D - 473 552 - -
Phac1g02661 571 SUPERFAMILY RNA-binding domain, RBD 231 323 IPR035979 GO:0003676
Phac1g02661 571 Gene3D - 215 326 IPR012677 -
Phac1g02661 571 FunFam Polyadenylate-binding protein 473 557 - -
Phac1g02661 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 304 IPR000504 GO:0003723
Phac1g02661 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 200 IPR000504 GO:0003723
Phac1g02661 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 110 IPR000504 GO:0003723
Phac1g02661 571 SUPERFAMILY RNA-binding domain, RBD 6 119 IPR035979 GO:0003676
Phac1g02661 571 Gene3D - 34 90 IPR012677 -
Phac1g02661 571 SUPERFAMILY RNA-binding domain, RBD 124 214 IPR035979 GO:0003676
Phac1g02661 571 FunFam Polyadenylate-binding protein 34 121 - -
Phac1g02661 571 SMART rrm2_1 41 113 IPR003954 GO:0003676
Phac1g02661 571 SMART rrm2_1 132 204 IPR003954 GO:0003676
Phac1g02661 571 SMART rrm2_1 235 307 IPR003954 GO:0003676
Phac1g02661 571 Coils Coil 203 223 - -
Phac1g02661 571 FunFam Polyadenylate-binding protein 122 216 - -
Phac1g02661 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 117 IPR000504 GO:0003723
Phac1g02661 571 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 474 551 IPR002004 GO:0003723
Phac1g02661 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 311 IPR000504 GO:0003723
Phac1g02661 571 Gene3D - 13 112 IPR012677 -
Phac1g02661 571 PANTHER OS02G0815200 PROTEIN 9 110 - -
Phac1g02661 571 SMART rrm1_1 41 113 IPR000504 GO:0003723
Phac1g02661 571 SMART rrm1_1 235 307 IPR000504 GO:0003723
Phac1g02661 571 SMART rrm1_1 132 204 IPR000504 GO:0003723
Phac1g02661 571 Gene3D - 117 214 IPR012677 -
Phac1g02661 571 SUPERFAMILY PABC (PABP) domain 478 554 IPR036053 GO:0003723
Phac1g02661 571 Pfam Poly-adenylate binding protein, unique domain 482 546 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02661 Phac-Chr1 35971707 35977223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02661 6 569 Eukaryotic Initiation Factors Gene Family AT2G36660 51.408 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02661 K13126 - gmx:100779547 944.495