Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02660 ATGGCGGTTCCTCCGTCGGTTGCCGCCTCTCCGGCGTCGCTCTACGTCGGTGACCTCCATCCCGACGTTTCCGACAGTCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCACCTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTATGGCTACGTCAACTTCGTTTCTCCTCAGGACGCGATTCTCGCAATCGAGACTAAGAATCATACGTTGCTGAATGGAAAAATGATGAGGGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAGAGCACTATTGGGAACTTGTTTGTCAAGTACATTCCTGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAGAAATATGGGAATATTTTGTCCAGCAAAGTTGTCACGTCTGACGATGGAAAGAGCAAAGGATACGGGTTTGTTCAATTTGAATCGGAGGAATCTTCACATGTTGCTATAGAGAAGCTGAATGGCTCTACTGTTGGTGATAAACAGTTATATGTTGGGAAGTTTGTAAAAAAAAGTGATCGCATTTTGCCTGGCGCGGATGCTAGATATACAAACTTGTACGTGAAGAATTTGGACTTGGATATTACAGAAGCAAAACTGAAGGAGAAGTTTTCCTCTTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACCACAATGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGAAACGAATGGATCACAATTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGTGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATATTGAAATACAAGGGATCAAACGTTTATGTGAAAAACATTGATGACAATGTAAGTGACGAAGAACTAAGCGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCAAGATGATAAAGGGATAAGTAAAGGATTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTGTATGTTGCCCTTGCTCAGCGGAAAGAGGATAGGAAAGCACAATTGCAGCATCAATACACACAGCAAATAGCAGGACTGGCCGGACCTTCGACTACCATTATCACTGGTGGATATCCTCCTTATTATTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACCTCTTGCATTGAGGCCGGGATGGGGGCCTAATGGCTTTGCATCCCCTGCTAGATCATTTCAACAGTCATCTGTTCCCGCAGTTTCTAACTATAATAGGCAGCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCATCACTGGGTAATACTAACTCAGGTACTTATTTGCAACAAGGCCAGCAGACTTCTCAGTCCATCATGATCTCTCCAAGAGAGTCAAGTTTTCAGCAGAGAACTGGACAGCCTAAGTACATATCCAGTGGACGCAAGCGTGACATGGAAAAAGGATCTGGTTCAAATTCTGGTAGAGGGTGCCAGGGGCCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCCGAGCAGCAAAAAGAGATATTGGGAGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCGGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGTTGGATCTCCTGGAATCGCCGGAGTCTCTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCTAAGACCAAAGTTTCTGGCCCGGACGTACTTCATTCAAATTACCTTTCAGCTGAAGTTGCAGTGAACTGA 1875 0.4528 MAVPPSVAASPASLYVGDLHPDVSDSHLVDAFSEFKSLTSVRVCKDSSTGKSLCYGYVNFVSPQDAILAIETKNHTLLNGKMMRVMWSRRDPDARKSTIGNLFVKYIPESIDNAGLQDIFKKYGNILSSKVVTSDDGKSKGYGFVQFESEESSHVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGADARYTNLYVKNLDLDITEAKLKEKFSSFGKIVSLAIAKDHNGMPKGFGFVNYDNPDDAKKAMEETNGSQLARAQKKAERVQILHHQFEEKRKEQILKYKGSNVYVKNIDDNVSDEELSDHFSACGTITSAKVMQDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQHQYTQQIAGLAGPSTTIITGGYPPYYYAATGVISHVPPRAGLMYQPLALRPGWGPNGFASPARSFQQSSVPAVSNYNRQHRQNRGRLNGHSASLGNTNSGTYLQQGQQTSQSIMISPRESSFQQRTGQPKYISSGRKRDMEKGSGSNSGRGCQGPEMLHSLLAGAAPEQQKEILGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLDLLESPESLSAKVEEAVQVLKNSKTKVSGPDVLHSNYLSAEVAVN* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02660 624 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 600 IPR006515 GO:0003723
Phac1g02660 624 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 604 IPR002004 GO:0003723
Phac1g02660 624 FunFam Polyadenylate-binding protein 97 181 - -
Phac1g02660 624 Gene3D - 526 605 - -
Phac1g02660 624 MobiDBLite consensus disorder prediction 456 504 - -
Phac1g02660 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Phac1g02660 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Phac1g02660 624 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Phac1g02660 624 Coils Coil 256 276 - -
Phac1g02660 624 SUPERFAMILY PABC (PABP) domain 531 607 IPR036053 GO:0003723
Phac1g02660 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Phac1g02660 624 SUPERFAMILY RNA-binding domain, RBD 183 256 IPR035979 GO:0003676
Phac1g02660 624 FunFam Polyadenylate-binding protein 270 378 - -
Phac1g02660 624 MobiDBLite consensus disorder prediction 456 525 - -
Phac1g02660 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Phac1g02660 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Phac1g02660 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 256 IPR000504 GO:0003723
Phac1g02660 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Phac1g02660 624 Pfam Poly-adenylate binding protein, unique domain 535 599 IPR002004 GO:0003723
Phac1g02660 624 Gene3D - 100 180 IPR012677 -
Phac1g02660 624 PANTHER RNA BINDING PROTEIN 12 74 - -
Phac1g02660 624 SMART rrm1_1 288 360 IPR000504 GO:0003723
Phac1g02660 624 SMART rrm1_1 192 260 IPR000504 GO:0003723
Phac1g02660 624 SMART rrm1_1 13 86 IPR000504 GO:0003723
Phac1g02660 624 SMART rrm1_1 101 173 IPR000504 GO:0003723
Phac1g02660 624 Gene3D - 261 378 IPR012677 -
Phac1g02660 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 271 IPR000504 GO:0003723
Phac1g02660 624 Gene3D - 181 260 IPR012677 -
Phac1g02660 624 SMART rrm2_1 192 264 IPR003954 GO:0003676
Phac1g02660 624 SMART rrm2_1 288 360 IPR003954 GO:0003676
Phac1g02660 624 SMART rrm2_1 101 173 IPR003954 GO:0003676
Phac1g02660 624 SMART poly_2 539 602 IPR002004 GO:0003723
Phac1g02660 624 Gene3D - 2 98 IPR012677 -
Phac1g02660 624 FunFam Polyadenylate-binding protein 4 96 - -
Phac1g02660 624 SUPERFAMILY RNA-binding domain, RBD 282 376 IPR035979 GO:0003676
Phac1g02660 624 CDD RRM4_I_PABPs 286 364 - -
Phac1g02660 624 FunFam Polyadenylate-binding protein 526 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02660 Phac-Chr1 35971707 35977223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02660 12 622 Eukaryotic Initiation Factors Gene Family AT2G36660 52.412 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02660 K13126 - gmx:100779547 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02660 1 35971707 35977223 Phac1g02660 1 35971707 35977223 ECH