Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02659 ATGGCGGTTCCTCCGTCGGTTGCCGCCTCTCCGGCGTCGCTCTACGTCGGTGACCTCCATCCCGACGTTTCCGACAGTCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCACCTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTATGGCTACGTCAACTTCGTTTCTCCTCAGGACGCGATTCTCGCAATCGAGACTAAGAATCATACGTTGCTGAATGGAAAAATGATGAGGGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAGAGCACTATTGGGAACTTGTTTGTCAAGTACATTCCTGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAGAAATATGGGAATATTTTGTCCAGCAAAGTTGTCACGTCTGACGATGGAAAGAGCAAAGGATACGGGTTTGTTCAATTTGAATCGGAGGAATCTTCACATGTTGCTATAGAGAAGCTGAATGGCTCTACTGTTGGTGATAAACAGTTATATGTTGGGAAGTTTGTAAAAAAAAGTGATCGCATTTTGCCTGGCGCGGATGCTAGATATACAAACTTGTACGTGAAGAATTTGGACTTGGATATTACAGAAGCAAAACTGAAGGAGAAGTTTTCCTCTTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACCACAATGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGAAACGAATGGATCACAATTAGGTTCTAAAATTCTGTATGTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGTGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAATATTGAAATACAAGGGATCAAACGTTTATGTGAAAAACATTGATGACAATGTAAGTGACGAAGAACTAAGCGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCAAGATGATAAAGGGATAAGTAAAGGATTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTGTATGTTGCCCTTGCTCAGCGGAAAGAGGATAGGAAAGCACAATTGCAGCATCAATACACACAGCAAATAGCAGGACTGGCCGGACCTTCGACTACCATTATCACTGGTGGATATCCTCCTTATTATTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACCTCTTGCATTGAGGCCGGGATGGGGGCCTAATGGCTTTGCATCCCCTGCTAGATCATTTCAACAGTCATCTGTTCCCGCAGTTTCTAACTATAATAGGCAGCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCATCACTGGGTAATACTAACTCAGGTACTTATTTGCAACAAGGCCAGCAGACTTCTCAGTCCATCATGATCTCTCCAAGAGAGTCAAGTTTTCAGCAGAGAACTGGACAGCCTAAGTACATATCCAGTGGACGCAAGCGTGACATGGAAAAAGGATCTGGTTCAAATTCTGGTAGAGGGTGCCAGGGGCCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCCGAGCAGCAAAAAGAGATATTGGGAGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCGGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGTTGGATCTCCTGGAATCGCCGGAGTCTCTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCTAAGACCAAAGTTTCTGGCCCGGACGTACTTCATTCAAATTACCTTTCAGCTGAAGTTGCAGTGAACTGA 1896 0.4509 MAVPPSVAASPASLYVGDLHPDVSDSHLVDAFSEFKSLTSVRVCKDSSTGKSLCYGYVNFVSPQDAILAIETKNHTLLNGKMMRVMWSRRDPDARKSTIGNLFVKYIPESIDNAGLQDIFKKYGNILSSKVVTSDDGKSKGYGFVQFESEESSHVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGADARYTNLYVKNLDLDITEAKLKEKFSSFGKIVSLAIAKDHNGMPKGFGFVNYDNPDDAKKAMEETNGSQLGSKILYVARAQKKAERVQILHHQFEEKRKEQILKYKGSNVYVKNIDDNVSDEELSDHFSACGTITSAKVMQDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQHQYTQQIAGLAGPSTTIITGGYPPYYYAATGVISHVPPRAGLMYQPLALRPGWGPNGFASPARSFQQSSVPAVSNYNRQHRQNRGRLNGHSASLGNTNSGTYLQQGQQTSQSIMISPRESSFQQRTGQPKYISSGRKRDMEKGSGSNSGRGCQGPEMLHSLLAGAAPEQQKEILGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLDLLESPESLSAKVEEAVQVLKNSKTKVSGPDVLHSNYLSAEVAVN* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02659 631 SMART rrm2_1 295 367 IPR003954 GO:0003676
Phac1g02659 631 SMART rrm2_1 192 264 IPR003954 GO:0003676
Phac1g02659 631 SMART rrm2_1 101 173 IPR003954 GO:0003676
Phac1g02659 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Phac1g02659 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Phac1g02659 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Phac1g02659 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Phac1g02659 631 SUPERFAMILY RNA-binding domain, RBD 182 274 IPR035979 GO:0003676
Phac1g02659 631 Coils Coil 263 283 - -
Phac1g02659 631 SUPERFAMILY PABC (PABP) domain 538 614 IPR036053 GO:0003723
Phac1g02659 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Phac1g02659 631 Gene3D - 100 180 IPR012677 -
Phac1g02659 631 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 534 611 IPR002004 GO:0003723
Phac1g02659 631 CDD RRM4_I_PABPs 293 371 - -
Phac1g02659 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Phac1g02659 631 SUPERFAMILY RNA-binding domain, RBD 291 383 IPR035979 GO:0003676
Phac1g02659 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Phac1g02659 631 Gene3D - 275 385 IPR012677 -
Phac1g02659 631 Gene3D - 2 98 IPR012677 -
Phac1g02659 631 Gene3D - 181 274 IPR012677 -
Phac1g02659 631 FunFam Polyadenylate-binding protein 4 96 - -
Phac1g02659 631 MobiDBLite consensus disorder prediction 463 511 - -
Phac1g02659 631 PANTHER RNA BINDING PROTEIN 12 74 - -
Phac1g02659 631 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Phac1g02659 631 SMART poly_2 546 609 IPR002004 GO:0003723
Phac1g02659 631 Pfam Poly-adenylate binding protein, unique domain 542 606 IPR002004 GO:0003723
Phac1g02659 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Phac1g02659 631 MobiDBLite consensus disorder prediction 463 532 - -
Phac1g02659 631 FunFam Polyadenylate-binding protein 182 276 - -
Phac1g02659 631 FunFam Polyadenylate-binding protein 97 181 - -
Phac1g02659 631 Gene3D - 533 612 - -
Phac1g02659 631 SMART rrm1_1 192 264 IPR000504 GO:0003723
Phac1g02659 631 SMART rrm1_1 13 86 IPR000504 GO:0003723
Phac1g02659 631 SMART rrm1_1 101 173 IPR000504 GO:0003723
Phac1g02659 631 SMART rrm1_1 295 367 IPR000504 GO:0003723
Phac1g02659 631 FunFam Polyadenylate-binding protein 277 385 - -
Phac1g02659 631 FunFam Polyadenylate-binding protein 533 617 - -
Phac1g02659 631 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 607 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02659 Phac-Chr1 35971707 35977223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02659 12 629 Eukaryotic Initiation Factors Gene Family AT2G36660 53.376 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02659 K13126 - gmx:100779547 1063.52