Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02651 ATGAACTCCTATGTCACCCCTCTCATTATCTCCACTGCTGGCATAGTTTGTTCTACAGTAGCGATAGCAGTGTACCACTGCATCCTCTTGAGGTATTTCGTTAGAACTCAGATAGCACAACACAGGGACAACATAACAAACACAAGTTATGTAAAGAGTGAAGGGGTCCAAGAAGAAATCCTTAACAAAATCCCAGTTTTCTCAATCTCTACACAAACAAGTAGTGCTGTCAATGCCATTCATTTGGACCAAAATATTGAATGCTCTATTTGCCTTGGACAATGGGAAGATGAGGATGTGGTGCGGTTGTTGCCTTCTTGTTATCATGTTTTCCATAAATCCTGCATTGATGCATGGTTCATGGACCATGCCAATTGCCCAGTTTGTCGGTCACCAATCACTTGTGATTGTGAGTTAGCCTTGCCAATCGCTTCACAAAATGATGGTGATGCCTAA 456 0.4211 MNSYVTPLIISTAGIVCSTVAIAVYHCILLRYFVRTQIAQHRDNITNTSYVKSEGVQEEILNKIPVFSISTQTSSAVNAIHLDQNIECSICLGQWEDEDVVRLLPSCYHVFHKSCIDAWFMDHANCPVCRSPITCDCELALPIASQNDGDA* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02651 151 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Phac1g02651 151 Pfam Ring finger domain 87 130 IPR001841 -
Phac1g02651 151 SMART ring_2 88 129 IPR001841 -
Phac1g02651 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 139 - -
Phac1g02651 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 135 IPR013083 -
Phac1g02651 151 SUPERFAMILY RING/U-box 70 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02651 Phac-Chr1 35922832 35923287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02651 48 131 Rapid Response to Elicitors AT3G16720 42.857 1.38e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02651 - - vra:106756930 228.794