Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02587 ATGAAAGATACTTCGACCGAGAACCATGCTGCTGTCTATGACATGAGCGATCAGACTCTTGTTATGGATGAAGATGGAGGGGATGCCCGTTCTAAGTGCATTGAAGGATTGGCTAAAGAGTATACAAATAATGCCCAAGCAAATTCTCATGTGAAAGATAAAAGCCGGAGCAAGGACGTTGTATGTTCCAATTGCTTGGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCGGAAGAGGTACCATCCCTCATGTGTGGATCCTCCTCTCAAATACATTCCTTTGAGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAAATAGAGTTTGGCGTGCATTCGGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAATAATAAAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGTCTCGCTCATGCTCACAACCGCTGGATTACAGAATCAATAATGCTTCTTGAGGCTCCTAAACTCTTGGCCAAGTTTAAGAGTAAACTGCAGGTTACCAGGTGGAAAAGATATTGGAGTATACCTCACCGCTTACTGCTTAAAAGAGAAATTGTGCATTTTGATGGCCATGGTGACAATGATTCAGTTTGCTGTTATGAGTGGCTTGTCAAATGGACTGGTCTTGGTTATGATAATGCTACATGGGAGTTACAAGATGCTTCATTTTTGACATCAGCCAAAGGCAGGAAACTTATACATGATTATGAAAGTCGTCGAAAGAGAGTTGATAAACTGTCAAAAAGTCATTTTGAAGACAATGAGGAGAGAAAAACTTTCGTTGCTGAATTATTAGTGTTGCCATTTGGATATTCACAAGGACTCTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGCATGAGTTGGCACAAAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAGGTGATTTTGTTTGTATTATCTTTGAATTGTAATAGCAAGAGGCCTTTTCTCATCATCTCAACTTCCACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAACAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTTTAATGAAGAAAATGGTATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTAAGGACTTACATGAACTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTGGACAGTATCAAGATTCTGAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGATCTGATTATATCAAACTGCTTTCATTCCTCAAGTCTGCACATCATGGGTCAAGTATTACTCCAATAGAAACTTCTTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAGCAGTATTGTTCAATTCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAGAAGTCCGACTCAGTTGATGCCCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTGATCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGTTCAGGGTGTACCTGTTGAAGAACATTTAGATATTGGCATAAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAAATCCTTTTGGAAGCAAGAAGACTTGGGTTAAGGGTGTTAATATTATTTCAGTCAACTAGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTGCGATATGGTAGAGCTTATACCCCTAAAACAAAGGAAGCCGCTTTAGACACATTTAATGATAGAGACAGTGGAAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCTCTAGTGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTTGACCCACAGAATGACCTAAGAGGCTTACAAAGAATGTCTATCAGCTCGCAGTTGAAACAGTTAACCGTTTTCAGGTTGTACTCATATTACACGGTTGAAGAGAAAATTTTAATGCTTGCGAAGGAGGGTATGTCTCTTGACAGTAATGTGCGGTTGATTAGCCAGAGTATTTCTCACACACTTCTAAAATGGGGCACCTCCCATTTGTTCAATAAGCTGGATGATTTACATGCCAGTGTAACTTCTGTTTCTACTCCAGACATTGCAGATCAATCACTTCTACATGATGTACTTTGTGAATTATCATCCCAATTGGTTTGTGGTGCTGATGATATTGATTGTCATGAATGGTCATTCATATCCACAATACAGCAGAATGGAGGGGATTATGCGAGGAACATTCTATTGCTAGGAGAAAGAATAATGAAGGGATTGGGCAGTGAGCCACGTGCTTTTTCCTGGAGTGATCTTGAAGGAAGGTATCCTCAATGGAAATTTTTGTCTGTTTCATCTCAGAGGATGAGGAGTAGGGCCAAACATTCTGATTACATACTAAACGAATCTGAATGTGAAGATCATACAATTATAGGAAAGAGGACATCATCAAATGCTTCCAAGAAGAGAAAAGTGTCCCGGGATAATGTTGATCATAATTTGAAGAAACGGACCAAGGATAAAGTTGACCCCAATAGGAGGAAAGCGTCCAAGGACGTTGTTGAAACAGAGGGGAGGGAACTGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTTCAATGATATTGTTGATTCTAGGGGCAGGAAAATGTCCAAGAATATTCAACCAAGGTCGAGGAGCAAGAAGAATTCAAGTGTTGCCAATAGAGCAAGTAAATCAAATGGTAGTTCAAATGGTTTGCCTAGTGTACTTGATTCCACAGGGCATCCTTTGGCCAATGCAACTACAGGAGGAACTGCAACAAACATGCAACTTTCAGAGAAAAGGAAACTACATGACGGACCAAATAGCAACAAATTCTTGCCAAAATCGGATGTATCAGGTCTTTGTGACATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCTGAGGATTCTTGAGGACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTGGCAGCTTCTTTGTTGAAACATGAGATTGATAGGAAGGATTCACTCACTCTAGCAAAACTGTGCTTGAATTTCAATTGCAATGAAGAGGAAGCCACAGATGTCTACTCAGAACTGTGGAAACATGTGAAGAAATTTTCTAATTATATACAGAATGGACTGTGTGCTGAGAAATATAATACAAATGGTGCTTCAGAAACTACCATGCCTGAGCTGAATAATTTGACGGAGGAGAAGCAGAATGATTTTCTGGATACTTGTGTTACAAAACTTGTGAAATCTGTCAATAATGAACATGATCTTACAATGAAATCTCACACAACAGGGGTTTCATGTGACCAGACTTTTACTCTTGGAATTTGTTCATTTCCAAATACACCCGCTAGTTTTCCTGTGGAAGCAATTTCTGTCTCCATGGAGTTTGGCTCCGAAGATGACATCATGGAATCTACGCCCTTAATAGCTGCAGAAGATTCAGCTCTTGAGCACGGGGGTAATGATGTCAACCCTCTTACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTGTGAAGATCCTCAAGTTTTAATGAATGAATTGGTTGCTATTGAGAATGCTATGAATATGTCTACTCATTCTTTGCAGCTTGACAGTGTTGAGGCAAATGCTGTAACTTCCATTGGTTCTGCTGTTCCTGAGGCCAGACTGTGGGGCAGTGTAATGAGTCCTGTATGTAATGAGTCAATTGGTCTGAAGTTTGCTGAGACAACCTTATATACACAACCATCGGATGCTAATTTGTGGCCGTTGCCTCAGATAGCAACGTCTGATATTCCATCTATTCCGGAGCACAATTCAGCTAGTACTGTCACGCCTCTAGATGATATTTTTTATCATAATCGTGAGGATCATTGTTACGTTCATGAGGCTGAAGTAATATTGGAAACACCAAACGACCTTGTGGAACCAGTTAACTCTTCCTTTGGTTCACCTGTGATACTGCAACCATTCACAAGTGTGGCCATGAATGAAAATATGACACATGTACCTGACAGCTTTACTATTCCTGGATATATGAACAGTGATTATTTTCAACATCATCATGTGGCATCTGAAATATCCCACCTTGCCTACCTAGACTCACTACTGGATGAAATGGAGAGAATAGAAAACACGAATGAAGAAGCCTTCATAGATCCACTACTAATTGAAATGGAGAGAATAGAAAAGGATAATGAAGAAGCCTTCAAGATACATGAGCAGAAGATATCGCTGCTTCGATCTGAATTTGAAAAGGAGGTTGAAAAATTGAGTGAAAAGTACAGGATTTTGCTTCAGAATGTTGATACTGAAGGAGCACTAAAAAAAATGGAACTTGAGACACAATGTAAGTTAGTGTTGAGCAGTGAGGTATTAGCTGAAGTTTGGATTCATATGCTTGATGGTTGTGAAAGGGCTGTGGGACAATGCTCAGAACAAGAGAGGAATGCCTAG 4758 0.3953 MKDTSTENHAAVYDMSDQTLVMDEDGGDARSKCIEGLAKEYTNNAQANSHVKDKSRSKDVVCSNCLGGGVLLCCSGKGCRKRYHPSCVDPPLKYIPLRFWHCIWCTKKKIEFGVHSVSEGVKSILDSREVVSNNKVMQREYFVKYQGLAHAHNRWITESIMLLEAPKLLAKFKSKLQVTRWKRYWSIPHRLLLKREIVHFDGHGDNDSVCCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIHDYESRRKRVDKLSKSHFEDNEERKTFVAELLVLPFGYSQGLYNQYLSYVNKLRMSWHKGQNALIVDDQIDQERIIKVILFVLSLNCNSKRPFLIISTSTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFFNEENGILFQILLSSSDIVVKDLHELRCIPWEAIIIDECQQSRISGHLDSIKILKTEMKLLLVSGQIKEDRSDYIKLLSFLKSAHHGSSITPIETSFSASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSILLSNLMLLCSGQKSDSVDALHELIISTRKCCDHPYLLEPALHNSVVQGVPVEEHLDIGIKASGKLLLLEKILLEARRLGLRVLILFQSTSGSGSIGDILDDVLCQRFGKDCYVRYGRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLSSVKLSSVDTVILFDSDFDPQNDLRGLQRMSISSQLKQLTVFRLYSYYTVEEKILMLAKEGMSLDSNVRLISQSISHTLLKWGTSHLFNKLDDLHASVTSVSTPDIADQSLLHDVLCELSSQLVCGADDIDCHEWSFISTIQQNGGDYARNILLLGERIMKGLGSEPRAFSWSDLEGRYPQWKFLSVSSQRMRSRAKHSDYILNESECEDHTIIGKRTSSNASKKRKVSRDNVDHNLKKRTKDKVDPNRRKASKDVVETEGRELSNHAIDPKTRKVFNDIVDSRGRKMSKNIQPRSRSKKNSSVANRASKSNGSSNGLPSVLDSTGHPLANATTGGTATNMQLSEKRKLHDGPNSNKFLPKSDVSGLCDILHFPKNVKVVALRILEDIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHEIDRKDSLTLAKLCLNFNCNEEEATDVYSELWKHVKKFSNYIQNGLCAEKYNTNGASETTMPELNNLTEEKQNDFLDTCVTKLVKSVNNEHDLTMKSHTTGVSCDQTFTLGICSFPNTPASFPVEAISVSMEFGSEDDIMESTPLIAAEDSALEHGGNDVNPLTDYLEKQSPIRSTDITQSDGKVCEDPQVLMNELVAIENAMNMSTHSLQLDSVEANAVTSIGSAVPEARLWGSVMSPVCNESIGLKFAETTLYTQPSDANLWPLPQIATSDIPSIPEHNSASTVTPLDDIFYHNREDHCYVHEAEVILETPNDLVEPVNSSFGSPVILQPFTSVAMNENMTHVPDSFTIPGYMNSDYFQHHHVASEISHLAYLDSLLDEMERIENTNEEAFIDPLLIEMERIEKDNEEAFKIHEQKISLLRSEFEKEVEKLSEKYRILLQNVDTEGALKKMELETQCKLVLSSEVLAEVWIHMLDGCERAVGQCSEQERNA* 1586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02587 1585 ProSitePatterns Zinc finger PHD-type signature. 62 105 IPR019786 -
Phac1g02587 1585 MobiDBLite consensus disorder prediction 897 962 - -
Phac1g02587 1585 ProSiteProfiles Chromo and chromo shadow domain profile. 119 184 IPR000953 -
Phac1g02587 1585 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 466 IPR014001 -
Phac1g02587 1585 SMART PHD_3 61 106 IPR001965 -
Phac1g02587 1585 Gene3D - 287 503 IPR038718 -
Phac1g02587 1585 Pfam Chromo (CHRromatin Organisation MOdifier) domain 121 175 IPR023780 -
Phac1g02587 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 466 IPR027417 -
Phac1g02587 1585 Pfam SNF2-related domain 288 560 IPR000330 GO:0005524|GO:0140658
Phac1g02587 1585 SUPERFAMILY Chromo domain-like 188 251 IPR016197 -
Phac1g02587 1585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 115 IPR013083 -
Phac1g02587 1585 SMART chromo_7 184 253 IPR000953 -
Phac1g02587 1585 SMART chromo_7 118 177 IPR000953 -
Phac1g02587 1585 Gene3D - 504 738 IPR027417 -
Phac1g02587 1585 Gene3D - 180 251 - -
Phac1g02587 1585 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 65 1116 - -
Phac1g02587 1585 ProSiteProfiles Zinc finger PHD-type profile. 59 108 IPR019787 -
Phac1g02587 1585 MobiDBLite consensus disorder prediction 887 1013 - -
Phac1g02587 1585 Gene3D - 1485 1566 - -
Phac1g02587 1585 MobiDBLite consensus disorder prediction 968 1013 - -
Phac1g02587 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 741 IPR027417 -
Phac1g02587 1585 Coils Coil 1467 1487 - -
Phac1g02587 1585 SUPERFAMILY FYVE/PHD zinc finger 51 109 IPR011011 -
Phac1g02587 1585 Coils Coil 1515 1535 - -
Phac1g02587 1585 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 591 756 IPR001650 -
Phac1g02587 1585 Gene3D - 120 176 - -
Phac1g02587 1585 SUPERFAMILY Chromo domain-like 80 175 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02587 Phac-Chr1 35237431 35261502 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac1g02587 SNF2_N 2.5e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02587 - K11643 gmx:100813574 2092.78