Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02576 ATGGGCAACATCTCAAGCGGCGGCGCCAACCCCCGTCGCCGGCACAGCGGAGCGTCAAGGCGGAGTCACCCGCCGCCTCCTCCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTCGTGTACCATGGTGCTGCACCTTATCCGAACCCACCCCTGCATTACCCGCAGTACCATTACACCGGTTACTACCCTCCGGCGCCTCCCATGCCTCATCAGCATCATCATCAACAACATCAACAGCATCAACATCCTCATCAACAACATCAACATCAACATCCTCTGCACATGAACCCGGCGTGGATTCCAGGGCGTTACCCTTGTGGGCCCATGATGCCTAACCCCGCACCTTTTGTTGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGACTCTTAGGCTTGAACCCGATGAGGGAAATTCTTCCCACTTCCTTATCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCGTCACCATTTATTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTAACACCAATGAAGGAAAACAGTCCTGCTCCAGTGACTGTGAATTTTGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCATCTGGAACTGGTATTGATTTTTCTGTTTTTGAGGAGTCCGAGTTACTTAAAGTGGGTGACATGGATGTATACCCGCTAGCAGTAAAGGCAGACGCATCCCCTGGTAATCATGATGAGTCAGATAGAACTCCAACATCTGGTAACAGCACAAACTCACAGATTACCCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCGACTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAACAGAAGCTGACTTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGCTTGTCGGAGCCTCGAGATACAATTGTTCATCCCTGTCGCCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACGAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGGGCTGA 1095 0.4986 MGNISSGGANPRRRHSGASRRSHPPPPPPVTPQPEIAANPFVYHGAAPYPNPPLHYPQYHYTGYYPPAPPMPHQHHHQQHQQHQHPHQQHQHQHPLHMNPAWIPGRYPCGPMMPNPAPFVEHQKAVTIRNDVNIRKETLRLEPDEGNSSHFLISFSFDATVSGSVTIYFFAKEGEGCILTPMKENSPAPVTVNFEQGLGQKFRQPSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNHDESDRTPTSGNSTNSQITQAVFEKEKGEFRLKVIKQILWVNGMRYELQEIYGIGNSTEADLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02576 364 PANTHER MAHOGUNIN 1 361 IPR045194 GO:0061630
Phac1g02576 364 MobiDBLite consensus disorder prediction 1 36 - -
Phac1g02576 364 MobiDBLite consensus disorder prediction 235 257 - -
Phac1g02576 364 Pfam Zinc finger, C3HC4 type (RING finger) 310 356 - -
Phac1g02576 364 MobiDBLite consensus disorder prediction 21 35 - -
Phac1g02576 364 SUPERFAMILY RING/U-box 311 356 - -
Phac1g02576 364 MobiDBLite consensus disorder prediction 65 89 - -
Phac1g02576 364 ProSiteProfiles Zinc finger RING-type profile. 312 351 IPR001841 -
Phac1g02576 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 361 IPR013083 -
Phac1g02576 364 FunFam probable E3 ubiquitin-protein ligase LOG2 296 361 - -
Phac1g02576 364 SMART ring_2 312 350 IPR001841 -
Phac1g02576 364 CDD mRING-HC-C3HC5_MGRN1-like 310 351 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02576 Phac-Chr1 35081483 35086777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02576 101 331 C3H Transcription Factor Family AT3G09770 61.983 1.89e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02576 - - gmx:100807343 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02576 1 35081483 35086777 Phac1g02576 1 35081483 35086777 ECH