Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02571 ATGGCCACGAACCGTTTCATCTGTGAAATATGCAACAAAGGATTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAGACCTGTGTCCACCACCACGCCGCCAGGGCTCTCGGCGACCTCACCGGAATAAAAAAGCACTATAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCTGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGAGAGTATAAGTGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTTATTACTCACAGGGCTTTCTGCGATGCCTTAGTCGAAGAGAGTTCGAGACTCTCCTCAGTTTCTACCAGTAGTCTAAATTTCAAGACCGAAGATGCAACTGTGATGAATACACAGGCTGGTTTGTCGTCACGTGGATTAATCACTGGTCAGGGAATGCAGAGTGTTCCACACTTTGGTCCACATGGGTTTCGTTTAATGGGAATGGGTGCAGACCAACAAAGACCAAACTTGTCACTGTGGTTGAATCAGGGAAATCATCACATCAATAACCCACTTGATGTGGCATCATCAAGTTCTTCAGGTTTGCCTGAGGTTGTGCAAATTTCACAGGCTAATAATGCCTTGATTGGTTCTTCTTCAATATTCTCCAATTTTGGAATGCCTGCATCCAATTCAAAGGGAGAAGGTGGAGCTTCCGATTTGGCATCTATTTATTCTGAGAGTCAAAACAAGAATTCAATCTCAGCTTCCCCAATGTCGGCCACTGCCCTTTTGCAGAAGGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGAGGCAGTTTTGGAGTCATGAGCTCATCTTCCGCCCAAAGTACTAGTCTCAATAGCAATGCAAACCAAAGTTGTGATCAACTTAACCAAGCCTTTCAGAACATGAACCAACATGAGAATTTCAATGGATCAAGCAGCAGTGCCACTATGTTGGGCAGTTCTACTGACTTTAGCTCATTGACACATTCATCAAACGGTTTTGATCAGTTTCTGATGCAAAACAATGTGGAACCAACTCAGCTAAAGCTCCATCCAGCCTCAAACACAGTGGAACATAACTTGACAAGAGATTTTCTTGGCATGAGTAGAAATGGAGGTGGACATCCCTTTCTACCCCAAGAGCTGGTCAAGTTTGCTTCCTTAGGCTCATCAATGGGTTTGAACCAATTCACTGCAGGCCATCAATGA 1323 0.452 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHHAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALVEESSRLSSVSTSSLNFKTEDATVMNTQAGLSSRGLITGQGMQSVPHFGPHGFRLMGMGADQQRPNLSLWLNQGNHHINNPLDVASSSSSGLPEVVQISQANNALIGSSSIFSNFGMPASNSKGEGGASDLASIYSESQNKNSISASPMSATALLQKAAQMGSTRSTNPSIFRGSFGVMSSSSAQSTSLNSNANQSCDQLNQAFQNMNQHENFNGSSSSATMLGSSTDFSSLTHSSNGFDQFLMQNNVEPTQLKLHPASNTVEHNLTRDFLGMSRNGGGHPFLPQELVKFASLGSSMGLNQFTAGHQ* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02571 440 SMART c2h2final6 82 102 IPR013087 -
Phac1g02571 440 SMART c2h2final6 47 77 IPR013087 -
Phac1g02571 440 SMART c2h2final6 6 28 IPR013087 -
Phac1g02571 440 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Phac1g02571 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Phac1g02571 440 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Phac1g02571 440 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Phac1g02571 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 413 IPR031140 -
Phac1g02571 440 Gene3D Classic Zinc Finger 2 29 - -
Phac1g02571 440 Gene3D Classic Zinc Finger 40 130 - -
Phac1g02571 440 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Phac1g02571 440 FunFam Zinc finger protein MAGPIE 2 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02571 Phac-Chr1 35016926 35019716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02571 1 427 IDZ Gene Family AT5G03150 47.490 2.99e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g02571 zf-C2H2_jaz 6.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02571 K25870 - gmx:100812495 743.036