Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02562 ATGTCTATAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCTCAACCTTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCATCTAGTGCTGGAGCGTTCTTTACTGTGTCCGATAATCACGTACTCCAACCTTCCAATTATGACAGACAGACATTTCATGTTGATAGTGGTTTTGTTGATCTTACAATGGGAAGTGGTCAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTATGAGAGAGGAAGTACAAGTAGATACTTCAATGCTGGAAGTTCAGCTGATGTTCCTATACCTTCGGAATTATGGCAGGAGAAGCCAAATATTGATTCTCAATATGTTCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGTCCTGCACTTGATTTGGATTCCAATCCATCTATAACCCATTTATCAACTAATCATTCACACAATTCGTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTGCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGACACAAGTCATTTCCTTGTTGGAAGTGGTGCTACTGTTAGCAATGCTTCTGTAGATGTTGGGTGCTTCCATCATGATTTTGGTACAAGCAGAAATCCTGCTCCTCCTCTAAGTTTTCAAAATAATCAAACTCAGACTGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCCACAATTAGGGCTTCTTCAAGCTTGCGCATGGGACATGTGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGTCATTGAGCACCCATGGCTGGCGGAACGGTGATAGAAATGGGAGATCAAGAATTTCAAGTCAAAGATATCGTTCGTTGACGGAGGAGAGTGGTCTCGCTGAACGATTTGCCTCGGAGGGTATCTTGGTTGTTGAGCGTGCATCGGTGTATGCTTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTACGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACAGGGGTCTCTGAGGATTTGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGTGTAATATGTCTGGAAGATTACAAGAACATGGATGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAACTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGCCCTATCTGCAAAGCATCTGCTTTGGGTGAGGATACAAGGGATAAATAA 1497 0.4255 MSIDSISFPSHWNSSTRSNGYASSGLNLDVPPHQPDASGTSNDHFVHSSSAGAFFTVSDNHVLQPSNYDRQTFHVDSGFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSADVPIPSELWQEKPNIDSQYVPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRPALDLDSNPSITHLSTNHSHNSYPTLPPVDHSSLVDVSGQTSATLTRDWSQMNISPANGRVLLPDTSAFGLDTSHFLVGSGATVSNASVDVGCFHHDFGTSRNPAPPLSFQNNQTQTARGIQSNYSQRSTPTIRASSSLRMGHVTSLDEGLPMVAESYSSRHPRSLSTHGWRNGDRNGRSRISSQRYRSLTEESGLAERFASEGILVVERASVYASRNMLDQHREMRMDIDNMSYEDLLALGERIGNVNTGVSEDLFSKCLTETIYCSSEQSQDEGNCVICLEDYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASALGEDTRDK* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02562 498 ProSiteProfiles Zinc finger RING-type profile. 445 487 IPR001841 -
Phac1g02562 498 SMART ring_2 445 486 IPR001841 -
Phac1g02562 498 MobiDBLite consensus disorder prediction 325 355 - -
Phac1g02562 498 MobiDBLite consensus disorder prediction 1 42 - -
Phac1g02562 498 CDD RING-H2_RNF24-like 445 490 - -
Phac1g02562 498 MobiDBLite consensus disorder prediction 282 302 - -
Phac1g02562 498 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 410 491 - -
Phac1g02562 498 Pfam Ring finger domain 444 487 IPR001841 -
Phac1g02562 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 491 IPR013083 -
Phac1g02562 498 MobiDBLite consensus disorder prediction 1 25 - -
Phac1g02562 498 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 61 491 IPR045191 GO:0061630
Phac1g02562 498 SUPERFAMILY RING/U-box 435 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02562 Phac-Chr1 34936152 34945161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02562 10 497 C3H Transcription Factor Family AT2G37150 40.323 1.81e-92 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02562 - - gmx:100803627 877.856