Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02561 ATGGGTCATAGGCACGTATATAACACATCTCCATTGTTCGAGGGTGAGCCTGACCAGAACTGGAATCATATGCCCATTGATCAACACTATGTGCACCTTGCACCATATTGCTTATTTAGACAGATCACTATTGCAGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCGGACAATATGTCTATAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCTCAACCTTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCATCTAGTGCTGGAGCGTTCTTTACTGTGTCCGATAATCACGTACTCCAACCTTCCAATTATGACAGACAGACATTTCATGTTGATAGTGGTTTTGTTGATCTTACAATGGGAAGTGGTCAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTATGAGAGAGGAAGTACAAGTAGATACTTCAATGCTGGAAGTTCAGCTGATGTTCCTATACCTTCGGAATTATGGCAGGAGAAGCCAAATATTGATTCTCAATATGTTCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGTCCTGCACTTGATTTGGATTCCAATCCATCTATAACCCATTTATCAACTAATCATTCACACAATTCGTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTGCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGACACAAGTCATTTCCTTGTTGGAAGTGGTGCTACTGTTAGCAATGCTTCTGTAGATGTTGGGTGCTTCCATCATGATTTTGGTACAAGCAGAAATCCTGCTCCTCCTCTAAGTTTTCAAAATAATCAAACTCAGACTGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCCACAATTAGGGCTTCTTCAAGCTTGCGCATGGGACATGTGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGTCATTGAGCACCCATGGCTGGCGGAACGGTGATAGAAATGGGAGATCAAGAATTTCAAGTCAAAGATATCGTTCGTTGACGGAGGAGAGTGGTCTCGCTGAACGATTTGCCTCGGAGGGTATCTTGGTTGTTGAGCGTGCATCGGTGTATGCTTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTACGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACAGGGGTCTCTGAGGATTTGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGTGTAATATGTCTGGAAGATTACAAGAACATGGATGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAACTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGCCCTATCTGCAAAGCATCTGCTTTGGGTGAGGATACAAGGGATAAATAA 1683 0.4248 MGHRHVYNTSPLFEGEPDQNWNHMPIDQHYVHLAPYCLFRQITIAGRTSTSENGSFIYPADNMSIDSISFPSHWNSSTRSNGYASSGLNLDVPPHQPDASGTSNDHFVHSSSAGAFFTVSDNHVLQPSNYDRQTFHVDSGFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSADVPIPSELWQEKPNIDSQYVPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRPALDLDSNPSITHLSTNHSHNSYPTLPPVDHSSLVDVSGQTSATLTRDWSQMNISPANGRVLLPDTSAFGLDTSHFLVGSGATVSNASVDVGCFHHDFGTSRNPAPPLSFQNNQTQTARGIQSNYSQRSTPTIRASSSLRMGHVTSLDEGLPMVAESYSSRHPRSLSTHGWRNGDRNGRSRISSQRYRSLTEESGLAERFASEGILVVERASVYASRNMLDQHREMRMDIDNMSYEDLLALGERIGNVNTGVSEDLFSKCLTETIYCSSEQSQDEGNCVICLEDYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASALGEDTRDK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02561 560 ProSiteProfiles Zinc finger RING-type profile. 507 549 IPR001841 -
Phac1g02561 560 CDD RING-H2_RNF24-like 507 552 - -
Phac1g02561 560 MobiDBLite consensus disorder prediction 387 417 - -
Phac1g02561 560 Pfam Ring finger domain 506 549 IPR001841 -
Phac1g02561 560 SUPERFAMILY RING/U-box 497 551 - -
Phac1g02561 560 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 123 553 IPR045191 GO:0061630
Phac1g02561 560 MobiDBLite consensus disorder prediction 83 103 - -
Phac1g02561 560 SMART ring_2 507 548 IPR001841 -
Phac1g02561 560 MobiDBLite consensus disorder prediction 344 365 - -
Phac1g02561 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 553 IPR013083 -
Phac1g02561 560 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 472 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02561 Phac-Chr1 34936152 34945161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02561 1 559 C3H Transcription Factor Family AT2G37150 39.683 1.37e-105 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02561 - - gmx:100803627 957.977