Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02555 ATGGGTCATAGGCACGTATATAACACATCTCCATTGTTCGAGGGTGAGCCTGACCAGAACTGGAATCATATGCCCATTGATCAACACTATGTGCACCTTGGTAGAACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCGGACAATATGTCTATAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAGGTCTCAACCTTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCATCTAGTGCTGGAGCGTTCTTTACTGTGTCCGATAATCACGTACTCCAACCTTCCAATTATGACAGACAGACATTTCATGTTGATAGTGGTTTTGTTGATCTTACAATGGGAAGTGGTCAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTATGAGAGAGGAAGTACAAGTAGATACTTCAATGCTGGAAGTTCAGCTGATGTTCCTATACCTTCGGAATTATGGCAGGAGAAGCCAAATATTGATTCTCAATATGTTCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGTCCTGCACTTGATTTGGATTCCAATCCATCTATAACCCATTTATCAACTAATCATTCACACAATTCGTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCTGCTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGACACAAGTCATTTCCTTGTTGGAAGTGGTGCTACTGTTAGCAATGCTTCTGTAGATGTTGGGTGCTTCCATCATGATTTTGGTACAAGCAGAAATCCTGCTCCTCCTCTAAGTTTTCAAAATAATCAAACTCAGACTGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCCACAATTAGGGCTTCTTCAAGCTTGCGCATGGGACATGTGACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGTCATTGAGCACCCATGGCTGGCGGAACGGTGATAGAAATGGGAGATCAAGAATTTCAAGTCAAAGATATCGTTCGTTGACGGAGGAGAGTGGTCTCGCTGAACGATTTGCCTCGGAGGGTATCTTGGTTGTTGAGCGTGCATCGGTGTATGCTTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTACGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACAGGGGTCTCTGAGGATTTGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGTGTAATATGTCTGGAAGATTACAAGAACATGGATGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAACTGCATTAAAAAGTGGTTATCTATGAAGAAATTATGCCCTATCTGCAAAGCATCTGCTTTGGGTGAGGATACAAGGGATAAATAA 1647 0.4262 MGHRHVYNTSPLFEGEPDQNWNHMPIDQHYVHLGRTSTSENGSFIYPADNMSIDSISFPSHWNSSTRSNGYASSGLNLDVPPHQPDASGTSNDHFVHSSSAGAFFTVSDNHVLQPSNYDRQTFHVDSGFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSADVPIPSELWQEKPNIDSQYVPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRPALDLDSNPSITHLSTNHSHNSYPTLPPVDHSSLVDVSGQTSATLTRDWSQMNISPANGRVLLPDTSAFGLDTSHFLVGSGATVSNASVDVGCFHHDFGTSRNPAPPLSFQNNQTQTARGIQSNYSQRSTPTIRASSSLRMGHVTSLDEGLPMVAESYSSRHPRSLSTHGWRNGDRNGRSRISSQRYRSLTEESGLAERFASEGILVVERASVYASRNMLDQHREMRMDIDNMSYEDLLALGERIGNVNTGVSEDLFSKCLTETIYCSSEQSQDEGNCVICLEDYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASALGEDTRDK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02555 548 MobiDBLite consensus disorder prediction 218 244 - -
Phac1g02555 548 SUPERFAMILY RING/U-box 485 539 - -
Phac1g02555 548 CDD RING-H2_RNF24-like 495 540 - -
Phac1g02555 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 105 541 IPR045191 GO:0061630
Phac1g02555 548 MobiDBLite consensus disorder prediction 375 403 - -
Phac1g02555 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Phac1g02555 548 Coils Coil 542 548 - -
Phac1g02555 548 MobiDBLite consensus disorder prediction 332 353 - -
Phac1g02555 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Phac1g02555 548 SMART ring_2 495 536 IPR001841 -
Phac1g02555 548 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 460 541 - -
Phac1g02555 548 MobiDBLite consensus disorder prediction 220 244 - -
Phac1g02555 548 Pfam Ring finger domain 494 537 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02555 Phac-Chr1 34936152 34944534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02555 1 547 C3H Transcription Factor Family AT2G37150 40.360 1.28e-108 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02555 - - gmx:100803627 966.837