Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02548 ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGATATCGCTAGGTTCCAGAAAAAGGAGAGCGATACTGATTCGGCGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAAGTAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGAAACTGTTGAAGGATTCAACGTGTTTAGAAATTCCGCATCTGTGGTGAAGTCCAGTGGTGAAGTTCAAGCTGATGAGGAGTCTATTGAGCTGAATAAGAAGAAGAATAAGAAGGAAAAAAATCGTCAACTCGAGCGGGACGCGATATTCAGAAAGCAGCACAACATTCACGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAATCAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTACCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTTATGAAGCTTAAGGACCCAGAAAAAGGTGGCATTCGAGCTGTCATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAGCTTGCTAAAAGAAAAAAATTTCGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTACTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTCGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCGTCAATCATACGCTCACTTTTCAGTGCTACATTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGCCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCTTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGAAACAGCATAG 1614 0.4244 MASDSSFLFSGIRFNRKKFGADIARFQKKESDTDSAKIWSVAEDESAKSREAVEEKTTSTKKRKRKGNSSETVEGFNVFRNSASVVKSSGEVQADEESIELNKKKNKKEKNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMFMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFRIKLMTKNLLRNATDFSKFPCDILISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPETA* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02548 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 344 IPR014001 -
Phac1g02548 537 Pfam Helicase conserved C-terminal domain 374 477 IPR001650 -
Phac1g02548 537 SMART helicmild6 396 477 IPR001650 -
Phac1g02548 537 Pfam DEAD/DEAH box helicase 166 331 IPR011545 GO:0003676|GO:0005524
Phac1g02548 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 489 IPR027417 -
Phac1g02548 537 SMART ultradead3 161 359 IPR014001 -
Phac1g02548 537 MobiDBLite consensus disorder prediction 44 73 - -
Phac1g02548 537 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 36 523 - -
Phac1g02548 537 MobiDBLite consensus disorder prediction 44 70 - -
Phac1g02548 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Phac1g02548 537 CDD DEADc_DDX52 153 347 IPR044764 GO:0003724|GO:0005524|GO:0030490
Phac1g02548 537 Gene3D - 84 343 IPR027417 -
Phac1g02548 537 CDD SF2_C_DEAD 356 486 - -
Phac1g02548 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 516 IPR001650 -
Phac1g02548 537 Gene3D - 344 521 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02548 Phac-Chr1 34876026 34880270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02548 136 515 Eukaryotic Initiation Factors Gene Family AT3G19760 30.446 4.66e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02548 K14779 - gmx:100800969 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02548 1 34876026 34880270 Phac1g02548 1 34876026 34880270 ECH