Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02547 ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGATATCGCTAGGTTCCAGAAAAAGGAGAGCGATACTGATTCGGCGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAAGTAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGGTATTCACATTCTCCGGGACGCGATATTCAGAAAGCAGCACAACATTCACGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAATCAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTACCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTTATGAAGCTTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTACTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTCGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCGTCAATCATACGCTCACTTTTCAGTGCTACATTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAATCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCTTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGAAACAGCATAG 1287 0.4351 MASDSSFLFSGIRFNRKKFGADIARFQKKESDTDSAKIWSVAEDESAKSREAVEEKTTSTKKRKRKGNSSGIHILRDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMFMKLKLMTKNLLRNATDFSKFPCDILISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRNLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPETA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02547 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 266 IPR014001 -
Phac1g02547 428 MobiDBLite consensus disorder prediction 42 69 - -
Phac1g02547 428 Pfam DEAD/DEAH box helicase 180 253 IPR011545 GO:0003676|GO:0005524
Phac1g02547 428 CDD DEADc_DDX52 113 269 IPR044764 GO:0003724|GO:0005524|GO:0030490
Phac1g02547 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 380 IPR027417 -
Phac1g02547 428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 407 IPR001650 -
Phac1g02547 428 Gene3D - 76 175 IPR027417 -
Phac1g02547 428 MobiDBLite consensus disorder prediction 42 61 - -
Phac1g02547 428 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
Phac1g02547 428 Gene3D - 249 412 IPR027417 -
Phac1g02547 428 Pfam Helicase conserved C-terminal domain 273 368 IPR001650 -
Phac1g02547 428 CDD SF2_C_DEAD 251 377 - -
Phac1g02547 428 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 34 166 - -
Phac1g02547 428 SMART ultradead3 121 279 IPR014001 -
Phac1g02547 428 Pfam DEAD/DEAH box helicase 126 164 IPR011545 GO:0003676|GO:0005524
Phac1g02547 428 SMART helicmild6 287 368 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02547 Phac-Chr1 34876026 34880270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02547 96 406 Eukaryotic Initiation Factors Gene Family AT3G19760 27.368 5.21e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02547 K14779 - gmx:100800969 689.878