Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02538 ATGGCCGACGGTCCGTCCAGTCCGGGAGGCGGCAGCCACGAGAGCGGTGACCACAGTCCCCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCCATCGCTAACATAAGTCGCATCATGAAGAAGGCGCTCCCTGCTAACGGGAAAATAGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGAGACGATTTGCTATGGGCAATGGCTACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTACCTCACAAGATACCGAGAGATGGAGGGTGATACCAAGGGCTCAGCCAAGGGTGGAGACACCTCTGCTAAGAAAGATGTTCAACCGAATCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTTTCACAAGGTGTTAGTTACACAAATTCTCAGTATTATATTTAG 489 0.499 MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGDTSAKKDVQPNPNAQLAHQGSFSQGVSYTNSQYYI* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02538 162 MobiDBLite consensus disorder prediction 119 162 - -
Phac1g02538 162 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Phac1g02538 162 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Phac1g02538 162 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Phac1g02538 162 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phac1g02538 162 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
Phac1g02538 162 MobiDBLite consensus disorder prediction 133 162 - -
Phac1g02538 162 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phac1g02538 162 Gene3D Histone, subunit A 16 151 IPR009072 GO:0046982
Phac1g02538 162 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Phac1g02538 162 MobiDBLite consensus disorder prediction 1 28 - -
Phac1g02538 162 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02538 Phac-Chr1 34814640 34819632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02538 7 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 82.550 1.47e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phac1g02538 CBFD_NFYB_HMF 1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02538 K08065 - gmx:100798667 298.901