Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02471 ATGTTCTGGGTTGGGAGAAAGAGAGAAAGTAACAAGGCACAAGAGAAAGGTTTTGGTTCTGTGGAATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAAGCAGAAAGTAGAAGGAGAAGAACTGAAAGAACAGGGAAAAAGTCTTAGCTTGTGGAGCAAACCCAAAATGCACGAGTGCTCCATCTGTGGCCAAGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACATAGAGGTGTCAGCAACGAAGGGTTTGTTCCTATTCCTTCTATCGACCAAGTTATTGCGAAAATCCCAGTTCTGAAAAGGTCCAACAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTCTAG 405 0.4691 MFWVGRKRESNKAQEKGFGSVEFECKTCNRKFSSFQALGGHRASHKKQKVEGEELKEQGKSLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGVSNEGFVPIPSIDQVIAKIPVLKRSNSTRVMCLDLELHL* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02471 134 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Phac1g02471 134 Gene3D Classic Zinc Finger 22 43 - -
Phac1g02471 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Phac1g02471 134 SUPERFAMILY beta-beta-alpha zinc fingers 23 93 IPR036236 -
Phac1g02471 134 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Phac1g02471 134 SMART c2h2final6 71 93 IPR013087 -
Phac1g02471 134 SMART c2h2final6 23 45 IPR013087 -
Phac1g02471 134 Gene3D Classic Zinc Finger 53 101 - -
Phac1g02471 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Phac1g02471 134 PANTHER ZINC FINGER PROTEIN ZAT5 14 132 - -
Phac1g02471 134 Pfam C2H2-type zinc finger 71 95 - -
Phac1g02471 134 Pfam C2H2-type zinc finger 23 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02471 Phac-Chr1 34374022 34374900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02471 20 132 C2H2 Transcription Factor Family AT2G37430 52.174 3.14e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g02471 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02471 - - pvu:PHAVU_001G170800g 256.914