Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02454 ATGGCTTTGATGTCTGGACTTCAGCGTCTACTTCGCCACACCCCACTTCTTCATTCGCACCATGCTTCCATTCGTTTCGCCTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTCTCTAGATTGACAACAGATGAAAAACTTAAGGAAGCATTTGCTTCGTTTGGACAGCTGGTGGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCGAAGGGATTTGCCTTTGTAACCTATACAAGCATAGAAGAAGCTGAAAAGGCTAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAGCCCAGACCTCCTCAGCAATCACAGTCTCGTCCCTCTGAATCAGGTTTCACTGTTAACAAAACAGTTGGGTGGTGTGGTTGA 420 0.45 MALMSGLQRLLRHTPLLHSHHASIRFASTLTSPKLFVSGLSRLTTDEKLKEAFASFGQLVEAKVITDRASGRSKGFAFVTYTSIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSRPSESGFTVNKTVGWCG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02454 139 MobiDBLite consensus disorder prediction 110 139 - -
Phac1g02454 139 FunFam RNA binding protein 20 133 - -
Phac1g02454 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Phac1g02454 139 PANTHER NUCLEOLAR PROTEIN 8 21 138 - -
Phac1g02454 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Phac1g02454 139 SUPERFAMILY RNA-binding domain, RBD 31 132 IPR035979 GO:0003676
Phac1g02454 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Phac1g02454 139 Gene3D - 22 133 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02454 Phac-Chr1 34272612 34275316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02454 35 115 Eukaryotic Initiation Factors Gene Family AT3G16380 39.506 7.51e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02454 - - gmx:100306326 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02454 1 34272612 34275316 Phac1g02454 1 34272612 34275316 ECH