LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g02453	ATGACATCGTTCTTAAAGCCTGAGAATGCTCTCAAAAGGGCGGAAGAGTTAATCAATGTTGGTCAGAAGCAGGATGCTTTACAGACTCTTCATGACCTCATTACCTCAAAGAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTTAAGTATGTTGAACTTTGTGTGGACATGCGCAAAGGCCGGTTTGCAAAAGATGGACTTATTCAGTATAGGATAATATGTCAGCAAGTCAATGTTAGTTCACTGGAGGAGGTGATCAAACACTTTATGCATTTGTCAACTGAGAAAGCTGAACAAGCTCGGAGTCAAGCACAGGCATTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGTTGAGTTATGTCAGTGGTGAGAAAGGAAAGGACAGATCTGATCGAGAGCTTGTTACCCCATGGTTTAAATTTCTTTGGGAAACTTACCGGACAGTGCTTGAGATATTGCGAAACAACTCAAAACTGGAAGCTTTATATGCTATGACAGCTCATCGAGCTTTTCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTCCGTAGACTTTGTGAAATCATAAGAAACCATTTGGCTAATCTCAATAAATACCGTGACCAAAGAGATAGGCCTGACCTTTCAGCTCCTGAAAGCTTACAACTGTATCTTGATACTAGAGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCAGATCAGTGGAGGATATACATGGATTGATGTGCTTGGTCAAGAAAACTCCCAAGCCATCTTTGATGGTTGTTTACTATGTGAAGTTGACTGAAATATTTTGGATATCATCAAGTCATCTTTATCATGCATATGCATGGTTCAGGCTCTTTTTATTGCAGAAAAGCTTCAATAAGAATCTGAGCCAGAAGGATTTGCAATTAATAGCTTCGTCTGTTGTTCTGGCTGCACTTTCAGTGCCTCCTCATGACCGCACACATGGTGCGTCTCATTTGGAACTGGAGCATGATAAAGAGAGAAATTTGAGGATGGCCAATCTCATTGGCTTTAATCTTGAGACTAAACCTGAAAGCAGAGAAATGCTGTCAAGATCATCACTTCTCGCTGAACTGGCATCCAAGGGAGTGATGTCTTGTGTAACTCAGGAAGTGAAAGATGTTTACCATCTTTTGGAACATGAATTTCATCCCTCAGATCTTGCATTGAAAGCGCTGCCCTTGATAACTAAAATCTCAAAGTTAGGGGGCAAGCTTTCTACAGCTTCTTCTGTTCCAGAAGTACAATTGTCTCAATATGTACCAGCACTGGAAAGACTGGCTACCATGAGGTTGCTGCAGCAGGTGTCCAATGTGTACCAGACAATGAAGATTGAGACTTTAACTGGGATGATCCCATTCTTTGACTTTTCTGTAGTGGAAAAGATTGCCGTAGATGCTGTAAAGCAGAAGTTTGTATCGATGAAGGTTGATCACATGAAAAATGTTGTGATTTTTTGCAAAACGAGTCTCGAGTCTGATGGTTTAAGGGATCACTTGGCCAATTTTGCTGAACAATTAAATAAGGCCCGGCAAATGATTTATCCTCCTGATAGGAAGCCATCTAAACTTGGAGCATTACTTCCAACTTTGACAGAGGTTGTTGCCAAAGAACATAAGAGGCTTCTTGCTCGAAAATCAATTATTGAGAAGCGGAAAGAGGAACAAGAACGACAGCTTCTTGAAATGGAACGGGAGGAGGAGTCAAAAAGACTAAGACTTCAGAAAATAACCGAAGAAGCAGAACAAAGACGGCTTGCCACAGAGTATGAGCAGAGGAAGAATCAGAGGATCCTCAGAGAGATAGAAGAAAGAGAAATTGAAGAAGCTCAAGCTTTACTCCAGGAAGCTGAAAAACGTATTAAAAAGAAGGGGAAAAAGCCTATCATTGAGGGAGACAAAATCACTAAGCAGACCTTGATGGAGTTAACTTTGACTGAACAACTCCGGGAAAGACAGGAAATGGAAAAGAAGTTGCAGAAGTTAGCAAAAACAATGGATTATTTGGAAAGAGCGAAAAGAGAAGAGGCTGCACCCCTTATTGAAGCTGCATATCAACAACGTTTAGTGGAAGAGAGACTTCTTCATGAGCGTGAACAACAGCAAGAAGTTGAAGTTAGCAAACAGAGGCATGAGGGAGATCTCAAAGAGAAGGAGAGGCTTGCACGAATGATGGGCAATAAGGAGATATATGAGGTCCGAGTTGTTAGTCATCGCCAAGCAGAGTTTAATAGACTGAGAAGAGAACGGGAAGAGCGAATCTCTAGGATTTTGCAGTCGAGGAGACAGGAGAGGGAAAAACTGAGGAAGTTGAAGTATTATCTCAAATTAGAAGAAGAGAGACAACAAAAATTGCATGAGGAGGAGGAAGCTCGGAAACGTGAAGAGGCTGAAAGGAGAAAGAAGGAAGAGGCTGAACGCTTAGCAAAACTGGCCGAAATAGCTGAAAAACAGAGGCAGAGAGAGCGAGAACTCGAGGAAAAGGAGAGACAAAGGAGAGAAGCATTGTTAGGCAGAGCTGCTGAACCAGCTCCTCCTGCTCGACCATTGGAATCTGTAACAGCTCCTGCTGCAGCAGCTGCAGCCGCTGCTGCTCCAACCCCTGGAAAATATGTGCCTAAGTTCAGGCGAGCTGAAAGAACAGGAACTGATCCTCCTCCGGAAACAGACCGCTGGAGTAACAGTAGCAGCAACAGGCAGGATGGTGACAGGTGGCGTAGTGATGATAAGAGAACTAGTTATGTTGCTGGTGGTGGAGGTTCAAGGTCATCTTCTTCTTGGTCCAGGAATCCCCGTTGA	2865	0.4283	MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHDKERNLRMANLIGFNLETKPESREMLSRSSLLAELASKGVMSCVTQEVKDVYHLLEHEFHPSDLALKALPLITKISKLGGKLSTASSVPEVQLSQYVPALERLATMRLLQQVSNVYQTMKIETLTGMIPFFDFSVVEKIAVDAVKQKFVSMKVDHMKNVVIFCKTSLESDGLRDHLANFAEQLNKARQMIYPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREIEEAQALLQEAEKRIKKKGKKPIIEGDKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVEVSKQRHEGDLKEKERLARMMGNKEIYEVRVVSHRQAEFNRLRREREERISRILQSRRQEREKLRKLKYYLKLEEERQQKLHEEEEARKREEAERRKKEEAERLAKLAEIAEKQRQRERELEEKERQRREALLGRAAEPAPPARPLESVTAPAAAAAAAAAPTPGKYVPKFRRAERTGTDPPPETDRWSNSSSNRQDGDRWRSDDKRTSYVAGGGGSRSSSSWSRNPR*	955

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g02453	954	Pfam	PCI domain	373	508	IPR000717	-
	Phac1g02453	954	Coils	Coil	615	649	-	-
	Phac1g02453	954	Gene3D	UVR domain	217	268	-	-
	Phac1g02453	954	MobiDBLite	consensus disorder prediction	939	954	-	-
	Phac1g02453	954	MobiDBLite	consensus disorder prediction	803	859	-	-
	Phac1g02453	954	FunFam	Eukaryotic translation initiation factor 3 subunit A	268	342	-	-
	Phac1g02453	954	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	441	532	IPR000717	-
	Phac1g02453	954	FunFam	Eukaryotic translation initiation factor 3 subunit A	352	494	-	-
	Phac1g02453	954	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT	1	934	IPR027512	GO:0005852
	Phac1g02453	954	FunFam	Eukaryotic translation initiation factor 3 subunit A	217	268	-	-
	Phac1g02453	954	ProSiteProfiles	PCI domain profile.	316	513	IPR000717	-
	Phac1g02453	954	Coils	Coil	796	856	-	-
	Phac1g02453	954	Coils	Coil	561	602	-	-
	Phac1g02453	954	MobiDBLite	consensus disorder prediction	803	954	-	-
	Phac1g02453	954	Hamap	Eukaryotic translation initiation factor 3 subunit A [EIF3A].	1	927	IPR027512	GO:0005852
	Phac1g02453	954	Coils	Coil	667	697	-	-
	Phac1g02453	954	Coils	Coil	93	120	-	-
	Phac1g02453	954	Gene3D	-	269	342	-	-
	Phac1g02453	954	Gene3D	-	352	510	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g02453	Phac-Chr1	34263812	34270505	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g02453	1	954	Eukaryotic Initiation Factors Gene Family	AT4G11420	72.103	0.0	1329

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g02453	K03254		-	gmx:100782598	1432.93