Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02431 ATGGACGACCACAACCCATACCCCATTCTCACGCCTTCAGGATTACCTCGCCAAAACAAACCCTCTCTTGCAGACGACGACGTCATGGAGCTGCTATGGCATAACGGCCAGGTCGTGATGCAGAGTCAGAACCAGCGTTCTCTCAGAAAATCGACGCCGCCATCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCACGGCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCGAGAAGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCGTTAACAACAGCAGCGCCATGCAAACTCTCACTACGTCTCAGCTGACGTACCACCGCCCCATGTCTGCACCGCCTCGACCTCCAATTCCGCTGCCGAGGCCGCCGGAACCGAAGCCGCCGGAACCGAAGACGCCGAACTTCGCGTACTTCGTGAGGCACAACACGAGAGCCGCCGAGCAGAGCGCGAAGGCCGCTGCGAGGGAATCCACAGTGGTGGATTCGTGCGATACGCCGACCGCCACGGCAGCGGTTTCAGAAACTGTGAGGAACACGGAGGAACCGAAGGAAGGAGGCGCCGGCGCTCCGGTGCCTTCGACAAGTGCCGGTGGCGGAAGGAGCACGATGATGTGCGACGTGACTACGCCGTCGTCGCCGGGAGGTTCGAGTAGCATTGGCGAGCCAGTTCAGGTGGCGGCGGCGGAGGACCGGAAGCGGAAGGGTCGGGAGGCGGAGGAATGGGAGTCTCAGAGCGAGGATGTTGATTTTGATTCGGAAGCAAAAAAACAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATACAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCAGCAGCGACAGCAGCTGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCGTGTTCCTGCAACTAATTCATCGAGAATGCAAGCAGAAAATCAGTCAGATAATCATATGGTTGCAGCTGGTCCACCTGATCCAAACCAGTCTCGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCCAATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGCAAGCCCAGTAACAATAGGGGCCATGAGAATCAGGAAAACCATTAG 1521 0.5371 MDDHNPYPILTPSGLPRQNKPSLADDDVMELLWHNGQVVMQSQNQRSLRKSTPPSRNSHDASAAGPSTAREIRPQLDNFNQHLFMREGEMASWLHYPIDDDVPPLDQAFCADFLYSPPTVNNSSAMQTLTTSQLTYHRPMSAPPRPPIPLPRPPEPKPPEPKTPNFAYFVRHNTRAAEQSAKAAARESTVVDSCDTPTATAAVSETVRNTEEPKEGGAGAPVPSTSAGGGRSTMMCDVTTPSSPGGSSSIGEPVQVAAAEDRKRKGREAEEWESQSEDVDFDSEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPATNSSRMQAENQSDNHMVAAGPPDPNQSRLPNFTDPYQQYLGPHPMQFQVIQNQAMNQPNVGKPSNNRGHENQENH* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02431 506 MobiDBLite consensus disorder prediction 202 307 - -
Phac1g02431 506 FunFam Basic helix-loop-helix transcription factor 294 357 - -
Phac1g02431 506 MobiDBLite consensus disorder prediction 431 445 - -
Phac1g02431 506 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Phac1g02431 506 MobiDBLite consensus disorder prediction 1 22 - -
Phac1g02431 506 SMART finulus 305 354 IPR011598 GO:0046983
Phac1g02431 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 365 IPR036638 GO:0046983
Phac1g02431 506 MobiDBLite consensus disorder prediction 40 72 - -
Phac1g02431 506 MobiDBLite consensus disorder prediction 226 250 - -
Phac1g02431 506 MobiDBLite consensus disorder prediction 475 498 - -
Phac1g02431 506 MobiDBLite consensus disorder prediction 140 163 - -
Phac1g02431 506 MobiDBLite consensus disorder prediction 137 164 - -
Phac1g02431 506 MobiDBLite consensus disorder prediction 427 506 - -
Phac1g02431 506 Gene3D - 294 357 IPR036638 GO:0046983
Phac1g02431 506 MobiDBLite consensus disorder prediction 40 64 - -
Phac1g02431 506 PANTHER TRANSCRIPTION FACTOR PIF3 18 487 IPR044273 GO:0003700|GO:0006355
Phac1g02431 506 CDD bHLH_AtPIF_like 299 362 IPR047265 -
Phac1g02431 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Phac1g02431 506 MobiDBLite consensus disorder prediction 257 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02431 Phac-Chr1 34042348 34047679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02431 15 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.733 2.63e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g02431 HLH 6.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02431 - - gmx:100797225 731.48