Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02429 ATGACCAATCACAATCACTGTGTTCCAGATTTCGATATCCAAATGGACGACCACAACCCATACCCCATTCTCACGCCTTCAGGATTACCTCGCCAAAACAAACCCTCTCTTGCAGACGACGACGTCATGGAGCTGCTATGGCATAACGGCCAGGTCGTGATGCAGAGTCAGAACCAGCGTTCTCTCAGAAAATCGACGCCGCCATCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCACGGCCAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCGAGAAGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCGTTAACAACAGCAGCGCCATGCAAACTCTCACTACGTCTCAGCTGACGTACCACCGCCCCATGTCTGCACCGCCTCGACCTCCAATTCCGCTGCCGAGGCCGCCGGAACCGAAGCCGCCGGAACCGAAGACGCCGAACTTCGCGTACTTCGTGAGGCACAACACGAGAGCCGCCGAGCAGAGCGCGAAGGCCGCTGCGAGGGAATCCACAGTGGTGGATTCGTGCGATACGCCGACCGCCACGGCAGCGGTTTCAGAAACTGTGAGGAACACGGAGGAACCGAAGGAAGGAGGCGCCGGCGCTCCGGTGCCTTCGACAAGTGCCGGTGGCGGAAGGAGCACGATGATGTGCGACGTGACTACGCCGTCGTCGCCGGGAGGTTCGAGTAGCATTGGCGAGCCAGTTCAGGTGGCGGCGGCGGAGGACCGGAAGCGGAAGGGTCGGGAGGCGGAGGAATGGGAGTCTCAGAGCGAGGATGTTGATTTTGATTCGGAAGCAAAAAAACAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATACAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCAGCAGCGACAGCAGCTGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCGTGTTCCTGCAACTAATTCATCGAGAATGCAAGCAGAAAATCAGTCAGATAATCATATGGTTGCAGCTGGTCCACCTGATCCAAACCAGTCTCGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCCAATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGCAAGCCCAGTAACAATAGGGGCCATGAGAATCAGGAAAACCATTAG 1563 0.5329 MTNHNHCVPDFDIQMDDHNPYPILTPSGLPRQNKPSLADDDVMELLWHNGQVVMQSQNQRSLRKSTPPSRNSHDASAAGPSTAREIRPQLDNFNQHLFMREGEMASWLHYPIDDDVPPLDQAFCADFLYSPPTVNNSSAMQTLTTSQLTYHRPMSAPPRPPIPLPRPPEPKPPEPKTPNFAYFVRHNTRAAEQSAKAAARESTVVDSCDTPTATAAVSETVRNTEEPKEGGAGAPVPSTSAGGGRSTMMCDVTTPSSPGGSSSIGEPVQVAAAEDRKRKGREAEEWESQSEDVDFDSEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPATNSSRMQAENQSDNHMVAAGPPDPNQSRLPNFTDPYQQYLGPHPMQFQVIQNQAMNQPNVGKPSNNRGHENQENH* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02429 520 MobiDBLite consensus disorder prediction 151 178 - -
Phac1g02429 520 PANTHER TRANSCRIPTION FACTOR PIF3 31 501 IPR044273 GO:0003700|GO:0006355
Phac1g02429 520 MobiDBLite consensus disorder prediction 441 520 - -
Phac1g02429 520 MobiDBLite consensus disorder prediction 54 78 - -
Phac1g02429 520 Pfam Helix-loop-helix DNA-binding domain 317 363 IPR011598 GO:0046983
Phac1g02429 520 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Phac1g02429 520 MobiDBLite consensus disorder prediction 191 321 - -
Phac1g02429 520 CDD bHLH_AtPIF_like 313 376 IPR047265 -
Phac1g02429 520 MobiDBLite consensus disorder prediction 271 286 - -
Phac1g02429 520 MobiDBLite consensus disorder prediction 205 221 - -
Phac1g02429 520 MobiDBLite consensus disorder prediction 1 36 - -
Phac1g02429 520 SMART finulus 319 368 IPR011598 GO:0046983
Phac1g02429 520 MobiDBLite consensus disorder prediction 489 512 - -
Phac1g02429 520 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 379 IPR036638 GO:0046983
Phac1g02429 520 MobiDBLite consensus disorder prediction 445 459 - -
Phac1g02429 520 MobiDBLite consensus disorder prediction 54 86 - -
Phac1g02429 520 MobiDBLite consensus disorder prediction 240 264 - -
Phac1g02429 520 MobiDBLite consensus disorder prediction 154 177 - -
Phac1g02429 520 Gene3D - 308 371 IPR036638 GO:0046983
Phac1g02429 520 FunFam Basic helix-loop-helix transcription factor 308 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02429 Phac-Chr1 34042348 34047679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02429 5 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.005 3.44e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g02429 HLH 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02429 - - gmx:100797225 760.37