Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02372 ATGGCGGTCTCCTGCAGTATGGACAAACGCCAGGTGGCAAGAAGCACGATTGACACGTGGCAGTTGGTTTATATGAAAACGACGTTGATGTTTACTTTTGTTGAGGTAAAGGATACAAACATGGTATTTTGTGGAGCGTTTGTCGCAATGTCTTTGAAGCTAGTGTGGGCCCTACCACGGTTGCTAATTGCAACCACTTCTCCTAATTTCCGTAGGAGGAATGATGATGAAAGCAGACACGTGGACCACACGGTAACGATTCTAAGATCCTTGTTCACCACGCCATTGTTTTCTTCCTCTTCTTCTTTGTTTTCACTCTTCAACTTCAGTACTCCACTCTTCACACACGCTTCTCATTACACCAGGTGTGCTCCAATGTCTAAAGATGATAACTCTTCACAGGATTCTTCATCTGATATTGAATTGGCTCTCTCCTTGACCCTCTCTCCCTATGCGCCAGCTTCCTCATTCACTGGGATTACCATTCTCACTTCTGGAACCAAGAGACCTGCCTCTATTTCTGATTCCGATTCTGATTCTGTTCTTCCTGCTACCTCTCCCAGACAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAACTATAATAGCCATAGCCATGCAAAGTCACCAGCCACGGAAGTTTTCAAAGCTACAGTTGACAAAAGAGCAAGCACTAGTACTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAACAACACTGTTTCCAAGGAAAACGTAAATCTCAGGAATTCCCTGTTTGTGAAAGTAAAAATGGATGGAATACCAATTGGAAGGAAGGTTGATTTGAATGTTCATGGTTCCTATGAAACCTTAGCTCAAACTTTGGAGGAAATGTTTGAAGAATCAACTACAGTCCTCACTAACAAAGTAGGATCAAATGGAGAAGATCATGGTACTATAGTTGGAGGAAATGGGCATTCAAAATGTCTGGATGGTTCTTCCGACTTTGTGCTCACTTATGAAGACAAGGATGGAGACTGGATGCTCGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTCAGAATCATGAGGACACATGAAGCTAATGGACTTGCTCCAAGATTGGAAAGAAAAATAACAGATCGAAATGCAAGCTCATATGGATAA 1158 0.4326 MAVSCSMDKRQVARSTIDTWQLVYMKTTLMFTFVEVKDTNMVFCGAFVAMSLKLVWALPRLLIATTSPNFRRRNDDESRHVDHTVTILRSLFTTPLFSSSSSLFSLFNFSTPLFTHASHYTRCAPMSKDDNSSQDSSSDIELALSLTLSPYAPASSFTGITILTSGTKRPASISDSDSDSVLPATSPRQVVGWPPLGAYRMNNYNSHSHAKSPATEVFKATVDKRASTSTGVRKSADGGSDSNNTVSKENVNLRNSLFVKVKMDGIPIGRKVDLNVHGSYETLAQTLEEMFEESTTVLTNKVGSNGEDHGTIVGGNGHSKCLDGSSDFVLTYEDKDGDWMLVGDVPWWMFLNSVRRLRIMRTHEANGLAPRLERKITDRNASSYG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02372 385 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 140 366 IPR003311 GO:0005634|GO:0006355
Phac1g02372 385 Gene3D - 251 374 - -
Phac1g02372 385 SUPERFAMILY CAD & PB1 domains 250 360 - -
Phac1g02372 385 MobiDBLite consensus disorder prediction 224 247 - -
Phac1g02372 385 FunFam Auxin-responsive protein 251 372 - -
Phac1g02372 385 Pfam AUX/IAA family 176 371 IPR033389 -
Phac1g02372 385 ProSiteProfiles PB1 domain profile. 256 364 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02372 Phac-Chr1 33411325 33414645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02372 205 370 B3 DNA Binding Superfamily AT4G23980 27.711 1.17e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac1g02372 AUX_IAA 2.2e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02372 K14484 - gmx:100789143 336.265