Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02350 ATGCTAGACATGACAAATTTTCAAAAGGTTCATACTCTAGTTCTTCCTATTCTCTTTCTATGTTTGCTTCCATTGAAAATTGCTTCATCATCAAGAGCAGAAGCAGAAGCCCTTGTCAAATGGAAAAACACTCTATCCCCACCTCTTCCTCCTTCTCTAAATTCATGGTCCCTCACCAACCTTCCCAACCTTTGCATCTGGGATGCCATTGTTTGTGACAACACCAACACAACAGTCTCAGAGATAAACTTGTCTGGTGCCAATCTCACTGGGACTATCACTGTCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAAATCAACCTCGATGCCAACCGTTTTGGTGGGTCAATACCATCAGCAATTGGTAACCTCTCCAAGCTCACACTGTTGGACTTGGGGAACAACTTACTTGAAAACACACTGCCTCATGAACTAGGGCAGCTAAGGGAGCTTCAATATCTCAGTCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGTTCAAATTACTTTATAACTCCTCCTGACTGGTCCCCATATTCATGCTTGCCTTCCTTGACACGCCTTGCTTTACATCTAAATCCATCATTGACTGGTGAATTCCCAAGTTTCATACTCAAGTGCCATAACTTGACATACCTTGACATCTCTTATAATGGATGGAATGGCACTATACCAGAATCCTTGTATAGCAATTTGGGCAAGCTAAAATACCTCAACCTCACCAACTGTCGGTTTGAAGGAAAACTATCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTCCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAACTGCGTAACATTTCTGCCCATGGAAAAATTCCTTCTTCCATAGGCCAACTCAGGGAGCTATGGCATCTTGATCTTAGTGTAAATTTTTTTAACTCTACAATCCCTTCCGAGCTTGGCCTATGCACAAATTTATCCTTCTTGAGTTTAGCAGTGAATGATTTGACTGGTCCTCTGCCCTTGTCATTAGCTAGTCTGTCTAGAATATCAGAATTGGGGATATCAGATAATTCCTTTTCTGGTGAACTTTCTGCTTCACTCATCTCTAACTGGACCCAGTTGATTTCCTTGCAAATCCAAAACAATAATTTTACAGGAAAGGTTCCTACACATATTGGCCTGTTGAAAAAAATTAACTTCCTCTATCTGTACAATAATCACTTCTCTGGTCCCATTCCTGGAGAGATTGGAAACCTGAAAGAAATAATAGAGTTAGACCTTTCACAAAACCAATTCTCTGGCCCAATTCCATCAACTCTTTGGAATCTGACAAACATTCAAGTCATTAATCTTTTCTTCAATCAGCTCTCTGGAACCATTCCCACGGATATTGGAAACTTGACCTCACTGCAAATCTTTGATGTCAACACCAATAACTTGTATGGGGAGTTGCCAGAAACCATTGCTCAACTAACAGCTTTAAGAAATTTTTCTGTCTTCAGCAATAACTTCACTGGCAGCATTCCTAGAGAATTTGGAAAGAGAAATCCTTTTTTGACTGGTGTCTACCTTACAAACAATAGTTTTTCCGGAGAACTGCCAGGCGACTTGTGCAGTGATGGCCAGCTAACTATTTTGGCAGTCAATGAGAACAGTTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCACTTACTAGAGTTCGGCTTGATGATAACCAGCTCACTGGAAATATCACAGACGCATTTGGGGTTCTACCAAATCTTGTTTTTATCTCACTTACTAGAAATCAACTTGTTGGTGAGCTCTCTCCGGAGTGGGGTGAGTGTGCCAACTTAACCAATATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCCTTCTGCGTTAAGTAAGTTGAGTCAATTAAGGTATCTAAGCCTTCATTCCAATGATTTCACTGGTAGTATCCCACCTGAAGTCGGAAATCTAAGCCTGCTTTTCGCGTTCAATCTGAGCAGTAACCAATTATCGGGAGAAATCCCAAAGAGTTACGGGAGATTGGCTCAGCTAAATTTTCTTGATTTATCAAATAACAGCTTCAGTGGAAGCATTCCTAAAGAGCTTGGAGATTGTGATCGCTTACTGAGCCTGAATTTAAGTCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAGTCTGTTCTCACTACAAATCATGTTGGACATCAGCAGCAACTCTCTTTCTGGGCCTCTTCCCCAAAACCTTGGAAAGTTAACAACACTGGAGATTCTCAATGTGTCACACAACGATCTATCAGGGACAATCCCACAATCATTTTCAACCATGATCAGCCTTCAATCTGTTGATTTTTCTTACAACAAATTGAGTGGTCCAATTCCCAGTGGTCGTGTTTTCCAGACAGCCACTGCTGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGACATAAAAGGATTAACTTGCCCCAAATCATTTTCCCCAGACAAATCCGGAGGAGTTAACAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTGTGCCTTACTTATTGGGATAATTAGTGTTGGAGTAATACTTTGTCGGCGGCATGACAAAAAACACCTTGATGAAGAGTCTAAAAGATTTAAAAAAAGTGATCAGCCTATTAGCGTGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGATTTTAATGACAAGTACTGCATTGGAAAAGGAGGATTTGGAAGTGTTTATAGAGCACAATTACTCACAGGTCAAGTTGTTGCTGTGAAGAGGCTCAATATATCAGACTCTGATGACATTCCAGCAATGAAGCGCCAGAGCTTTTTGAATGAGATAGAATCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAATATGTAGACAGAGGAAGTTTGGCAAAAGTGTTGTACACAGAGGAAGGAAAATCGGAGCTAAGGTGGGCCACAAGGCTAAAAATTGTGCAAGGAATAGCACATGCAATTTCATACTTGCACACTGACTGCTCCCCACCAATCGTGCACCGGGATGTAACACTGAATAACATATTACTAGACTCCGACTTAGAACCTCGTCTTGCTGATTTTGGCACAGCAAAACTGCTAAGCTCAGACACTTCAACTTGGACCTCAGTTGCTGGATCCTATGGTTACATGGCTCCAGAGCTAGCACAAACTATGAGAGTGACTGAGAAGTGCGACGTGTATAGTTTTGGGGTGGTGGTGATGGAGATAATGATGGGAAAGCATCCTGGAGAACTCTTGAGTACACTGTCTTCAAAGAACTATTTGTCATCAACGGAGGAAGAACCACAGGTGGTATTGAAGGAGGTGCTAGACCAAAGGCTTCCACCTCCAACAGGCCAATTAGCAGAAGCAGTAGTGTTTACAATGACTATAGCTTTGGCATGCACACGTGCGGCTCCAGAGTCCAGACCCATCATGCGTGCTGTGGCACAAGAACTATCGGCTACTACTCATGCTTATCTTCCCCTGCCATTTGGCATCATAACCATGAACAGGCTTTCAATGCAGGGCTCCACAAATAGTGTGTCATAA 3714 0.4187 MLDMTNFQKVHTLVLPILFLCLLPLKIASSSRAEAEALVKWKNTLSPPLPPSLNSWSLTNLPNLCIWDAIVCDNTNTTVSEINLSGANLTGTITVLDFASLPNLTQINLDANRFGGSIPSAIGNLSKLTLLDLGNNLLENTLPHELGQLRELQYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSPYSCLPSLTRLALHLNPSLTGEFPSFILKCHNLTYLDISYNGWNGTIPESLYSNLGKLKYLNLTNCRFEGKLSPNLSMLSNLKELRIGNNMFNGPVPTEIGLISGLQILELRNISAHGKIPSSIGQLRELWHLDLSVNFFNSTIPSELGLCTNLSFLSLAVNDLTGPLPLSLASLSRISELGISDNSFSGELSASLISNWTQLISLQIQNNNFTGKVPTHIGLLKKINFLYLYNNHFSGPIPGEIGNLKEIIELDLSQNQFSGPIPSTLWNLTNIQVINLFFNQLSGTIPTDIGNLTSLQIFDVNTNNLYGELPETIAQLTALRNFSVFSNNFTGSIPREFGKRNPFLTGVYLTNNSFSGELPGDLCSDGQLTILAVNENSFSGPLPKSLRNCSSLTRVRLDDNQLTGNITDAFGVLPNLVFISLTRNQLVGELSPEWGECANLTNMDMGSNKLSGKIPSALSKLSQLRYLSLHSNDFTGSIPPEVGNLSLLFAFNLSSNQLSGEIPKSYGRLAQLNFLDLSNNSFSGSIPKELGDCDRLLSLNLSHNSLSGEIPNELGSLFSLQIMLDISSNSLSGPLPQNLGKLTTLEILNVSHNDLSGTIPQSFSTMISLQSVDFSYNKLSGPIPSGRVFQTATAEAYAGNSGLCGDIKGLTCPKSFSPDKSGGVNKKVLLGVIIPVCALLIGIISVGVILCRRHDKKHLDEESKRFKKSDQPISVVWGRDGKFTFSDLVKATDDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPAMKRQSFLNEIESLTGVRHRNIIKLYGFCSCRGQMFLVYEYVDRGSLAKVLYTEEGKSELRWATRLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSDTSTWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVMEIMMGKHPGELLSTLSSKNYLSSTEEEPQVVLKEVLDQRLPPPTGQLAEAVVFTMTIALACTRAAPESRPIMRAVAQELSATTHAYLPLPFGIITMNRLSMQGSTNSVS* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02350 1237 ProSitePatterns Protein kinases ATP-binding region signature. 938 960 IPR017441 GO:0005524
Phac1g02350 1237 Pfam Leucine Rich Repeat 782 801 IPR001611 GO:0005515
Phac1g02350 1237 Pfam Leucine Rich Repeat 250 270 IPR001611 GO:0005515
Phac1g02350 1237 FunFam MDIS1-interacting receptor like kinase 2 1013 1213 - -
Phac1g02350 1237 Gene3D Ribonuclease Inhibitor 371 539 IPR032675 -
Phac1g02350 1237 Gene3D Ribonuclease Inhibitor 540 851 IPR032675 -
Phac1g02350 1237 Gene3D Phosphorylase Kinase; domain 1 893 1012 - -
Phac1g02350 1237 SUPERFAMILY RNI-like 284 623 - -
Phac1g02350 1237 Gene3D Transferase(Phosphotransferase) domain 1 1013 1214 - -
Phac1g02350 1237 SUPERFAMILY L domain-like 49 383 - -
Phac1g02350 1237 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Phac1g02350 1237 CDD STKc_IRAK 938 1207 - -
Phac1g02350 1237 Gene3D Ribonuclease Inhibitor 192 295 IPR032675 -
Phac1g02350 1237 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Phac1g02350 1237 SUPERFAMILY L domain-like 585 842 - -
Phac1g02350 1237 ProSiteProfiles Protein kinase domain profile. 932 1215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g02350 1237 PANTHER LEUCINE RICH REPEAT KINASE 2 486 1211 - -
Phac1g02350 1237 FunFam Leucine Rich Repeat family protein, expressed 193 289 - -
Phac1g02350 1237 FunFam MDIS1-interacting receptor like kinase 2 371 537 - -
Phac1g02350 1237 Pfam Protein kinase domain 934 1142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g02350 1237 SUPERFAMILY Protein kinase-like (PK-like) 911 1207 IPR011009 -
Phac1g02350 1237 Gene3D Ribonuclease Inhibitor 297 370 IPR032675 -
Phac1g02350 1237 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 538 853 - -
Phac1g02350 1237 FunFam Leucine-rich repeat receptor protein kinase MSP1 894 1012 - -
Phac1g02350 1237 FunFam MDIS1-interacting receptor like kinase 2 31 192 - -
Phac1g02350 1237 SMART LRR_typ_2 779 802 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 101 124 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 610 634 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 706 730 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 125 149 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 658 682 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 320 344 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 489 513 IPR003591 -
Phac1g02350 1237 SMART LRR_typ_2 441 465 IPR003591 -
Phac1g02350 1237 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1058 1070 IPR008266 GO:0004672|GO:0006468
Phac1g02350 1237 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02350 Phac-Chr1 33302415 33306690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02350 13 676 Receptor kinase-like Gene Family AT4G08850 32.733 1.29e-81 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phac1g02350 Pkinase 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02350 - - pvu:PHAVU_001G163700g 2262.26