Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02305 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCAAGAAGAAGATCAAATTCTCATCAGTTACATCAACACTTATGGCCATGCTAATTGGCGTTCACTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGCTGTAGACTCCGGTGGATAAATTATCTGAGGCCAGACATCAAACGAGGCAACTTCACCCGAGAAGAAGAGGATGCTATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCAGCGAGATTACCTGGTAGAACAGACAACGAGATAAAGAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCGACAAAGCCACGACCAAAAACGAAGCAAAAAACAAGCGAAGTTGGATGGGGACGCTTCCAAAACCAACTACCAAGACGCCAAACTAGAACAACAAGATGAGCCCGTGAACAACATGCACAGTCATGCATCAACCAAAGAAGATAATAGCACAGAGGATATGCCACTTTCTCCTCCCCAATGTTCTAGCGACATGTCTTCCCTCACCACTAGTGGCAACAATAGCAGCATTAATAATAATACTAATAATTGTGACATGTCCTTGCACGTTAATGATATCGACACACCGGAGAACAATCTTGCATTGGACGAGGATTTCTGGTCTGAAGTTTTGTCATCTGATGATAATTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTATGGTCGATTTGAACCGATGTCTAGCGAAGAAGGGGTGCTTATAGATGGTAGTTCGTCAAGTATGTGCGATGGCATGGACTTTTGGTGCAACGTTTACGCTAGAGCTGAGGAATTCAACCAGTTATTGGAATTATGA 879 0.446 MGRAPCCEKMGLKRGPWTQEEDQILISYINTYGHANWRSLPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYRQSHDQKRSKKQAKLDGDASKTNYQDAKLEQQDEPVNNMHSHASTKEDNSTEDMPLSPPQCSSDMSSLTTSGNNSSINNNTNNCDMSLHVNDIDTPENNLALDEDFWSEVLSSDDNSGETSGFPSIDYGRFEPMSSEEGVLIDGSSSSMCDGMDFWCNVYARAEEFNQLLEL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02305 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phac1g02305 292 CDD SANT 69 112 IPR001005 -
Phac1g02305 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Phac1g02305 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phac1g02305 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phac1g02305 292 Gene3D - 69 142 - -
Phac1g02305 292 CDD SANT 16 61 IPR001005 -
Phac1g02305 292 SMART sant 13 63 IPR001005 -
Phac1g02305 292 SMART sant 66 114 IPR001005 -
Phac1g02305 292 FunFam Transcription factor MYB15 68 141 - -
Phac1g02305 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phac1g02305 292 MobiDBLite consensus disorder prediction 118 143 - -
Phac1g02305 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phac1g02305 292 Gene3D - 7 67 - -
Phac1g02305 292 MobiDBLite consensus disorder prediction 144 198 - -
Phac1g02305 292 MobiDBLite consensus disorder prediction 112 198 - -
Phac1g02305 292 FunFam Myb transcription factor 11 67 - -
Phac1g02305 292 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Phac1g02305 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02305 Phac-Chr1 32820124 32822112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02305 1 292 MYB Transcription Factor Family AT2G31180 46.644 1.95e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac1g02305 Myb_DNA-binding 5.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02305 K09422 - gmx:100775603 451.44