Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02290 ATGTTAAGAAAATTGAATGATGTTAATGTCAACGATGCCTGGAAACATGGTCGGGTCAATCGGGATGATGAAGAAGATCATGACGACGAAGACCCAACAATACCTGATGACCATTTACAACATTTTCCACCAAACCCCCTAGTCAACCATGATGGTCAGATGACTTCCCAAATTTGGGATAGTTTTCATCTAGAATCCCATCTCAACTCATGGGAAGAGTTGTTTTTGTTCAACAACCTGCCCTTGAATAATGCACCAAATGAATCGTCCTTATTGGACTCCAACTCCTCATCCTCCAATGCAGAAATGGAGTTACAAGAGCACACCTCTGATACTACATATGATGGTTCAAATCCACAGCGTCTATCTGTAGCCCCAACAAAGAAAGAGAAGAGACCCTATAGAGGAGTAAGAAGAAGACCATGGGGAAAATGTGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATCGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCCGCACACGTGGTGATGGAGTCCCTCAAAGACATGGGTTTCAAGGCACTGAGAAATAGTGTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACGAAATCTAGGGCTAGCAGAAATGGTGGTAAAAAGGTTAAAAGGGGTTGCAGTAAAGGGAAATTTGATCCTACTACTGAAACTGTGTTGGTGTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGGTGA 831 0.4344 MLRKLNDVNVNDAWKHGRVNRDDEEDHDDEDPTIPDDHLQHFPPNPLVNHDGQMTSQIWDSFHLESHLNSWEELFLFNNLPLNNAPNESSLLDSNSSSSNAEMELQEHTSDTTYDGSNPQRLSVAPTKKEKRPYRGVRRRPWGKCAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAHVVMESLKDMGFKALRNSVSPLLELKRMHVMRTKSRASRNGGKKVKRGCSKGKFDPTTETVLVLEDLGPEYLEQLLTFTSPGSW* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02290 276 Gene3D AP2/ERF domain 133 193 IPR036955 GO:0003700|GO:0006355
Phac1g02290 276 SMART rav1_2 133 197 IPR001471 GO:0003700|GO:0006355
Phac1g02290 276 MobiDBLite consensus disorder prediction 88 137 - -
Phac1g02290 276 MobiDBLite consensus disorder prediction 16 52 - -
Phac1g02290 276 Pfam AP2 domain 134 179 IPR001471 GO:0003700|GO:0006355
Phac1g02290 276 CDD AP2 134 190 IPR001471 GO:0003700|GO:0006355
Phac1g02290 276 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Phac1g02290 276 PRINTS Ethylene responsive element binding protein signature 157 173 IPR001471 GO:0003700|GO:0006355
Phac1g02290 276 ProSiteProfiles AP2/ERF domain profile. 133 191 IPR001471 GO:0003700|GO:0006355
Phac1g02290 276 MobiDBLite consensus disorder prediction 88 124 - -
Phac1g02290 276 FunFam Ethylene-responsive transcription factor 2 132 192 - -
Phac1g02290 276 PANTHER DNA-BINDING DOMAIN 101 268 IPR044808 GO:0003700|GO:0009873
Phac1g02290 276 SUPERFAMILY DNA-binding domain 134 192 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02290 Phac-Chr1 32614208 32620831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02290 105 276 AP2-EREBP Transcription Factor Family AT3G23240 48.876 1.61e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g02290 AP2 7.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02290 K14516 - gmx:100818907 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02290 1 32614208 32620831 Phac1g02290 1 32614208 32620831 ECH
Phac1g02290 1 32614208 32620831 Phac7g02007 7 21835768 21837088 PCT