Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02288 ATGGCACTCAACCACAACCCCTCTTACAAGCTTCTACATCAAGCTCCCCCACCCATCAAAACTCATGCTACCACAATCCATCACACACCACAACCTGCTTCAAATTCTGCTTCTGCTTTACCCATACTTGCCATCATTGTTCCCAGCATCTTTGTCACTGTTTTCATACTCATCACCTACTTAACTCTTCTCACCAAATTCTTCTCAAACTGGTACATTCTTAACCCCTTGAGATGGATTTTCACCTTACTTATCCCTCAACATGAAGATCAAGACCCCTTCATGGCACTCTCTCCAAGGATGTGGAGCCAAGGACTTGATGAATCTGCCATCAGAGAAATCCCGACACTTCAATTCACAAAAGGAGATGTTGAAAAGAATCAAAGTGTGTATGGCTGCGTGGTTTGTTTGACTGAGTTTCAAGATCATGATATGCTAAAAGTTCTTCCCATTTGCAAACATGCCTTTCACTTTCACTGCATTGACATATGGCTTCAAACCAATGCCAATTGCCCTCTTTGTAGATCAAACGTTATTTCTGGCAACACACACTGTCCAATGGATCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTTACGTGGGCAGTGATGAGGATTTTGTTGTCATTGAACTTGGGGGAGGAGAACACAGGGAGGCACTGCCGCAGATGCAACAAGAAAGAAGTGACTCAAGGGAAACAGTAGTAGAAAGTAGATGCCACTCTATTATAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGCATTGGTGTTGGGAAGAAAGATGAGCAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAACACTAGGCAAGTTTACTTGGATTTTCAAATCATCATGCAACAGAATAATAGGCATCTAAATCAGGCTAGTGCCAATGAAGATTGCAATACCTGA 954 0.4235 MALNHNPSYKLLHQAPPPIKTHATTIHHTPQPASNSASALPILAIIVPSIFVTVFILITYLTLLTKFFSNWYILNPLRWIFTLLIPQHEDQDPFMALSPRMWSQGLDESAIREIPTLQFTKGDVEKNQSVYGCVVCLTEFQDHDMLKVLPICKHAFHFHCIDIWLQTNANCPLCRSNVISGNTHCPMDHIIAPSSSPQDSQLLSYVGSDEDFVVIELGGGEHREALPQMQQERSDSRETVVESRCHSIIRKCHHVSIMGDECIGVGKKDEQFSIQPIRRSFSMDSANTRQVYLDFQIIMQQNNRHLNQASANEDCNT* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02288 317 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Phac1g02288 317 SUPERFAMILY RING/U-box 111 182 - -
Phac1g02288 317 PANTHER RING-H2 FINGER PROTEIN ATL16 18 308 IPR044600 GO:0016567|GO:0016740
Phac1g02288 317 FunFam E3 ubiquitin-protein ligase ATL6 96 181 - -
Phac1g02288 317 SMART ring_2 133 174 IPR001841 -
Phac1g02288 317 Pfam Ring finger domain 133 175 IPR001841 -
Phac1g02288 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02288 Phac-Chr1 32607260 32608436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02288 33 306 C3H Transcription Factor Family AT1G04360 41.100 4.20e-61 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02288 K19041 - gmx:100809883 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02288 1 32607260 32608436 Phac1g02288 1 32607260 32608436 ECH
Phac1g02288 1 32607260 32608436 Phac7g02011 7 22180446 22182127 PCT