Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02252 ATGTCGAATCAGGTGGCGAAGGTGCGGAGGAACACGATTGTAGCATGCATGACTTGCCCACTTTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTATGGATGAGGAATTGGAAAGTTGTCCAATATGCTGCATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAATTGTGACCTCAATACCATTACCAGCTAGGAGGAAGGAGAGATCTCTTTCGTCTTTGGTGGTCAACACTCCAAGGGTATCTACACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAGTGGTCTGCGGTCTACTAGTTTTTCCATTGAGAAGCCCATTAAAAAAGAGGAAGAGTTACTGGAAGATCATCCTGGGAGTTCAAGCTCACCTGAAACTTCAAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCCGCACCCAACAAAGGATCAGAGAATGGTGCTGAACCATGGGATACAAAATTGGATCTCTGGAAGCCTTTGAATTGTTTAGTAGAGGTGGCAAGTAGGAGTAAATCTTTCAAGTCTCATGTGCAAGGGTCTGATGCTAAATTAGAAATCACTCAAGTAAATGAGAGCGACTCTCAAGTGCAGAAAACTAAAACTAAGGAAAATAAACGTAAGGCAAAAGTTGAAGATGAAAAGATTAGTCCTTATCCTGCTTCTTCAGATACAGCAAAACCCAATAAATTGCGCAGAATGCGCAAGAAGAAGGAGCCAGCTTCAGGAGAATCAAGCATATCACCCCAAGCTGTGCTGGATTCTGCCACTAGTAGTAGACTCTCTAGGACTGGTCCAATCTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGGAGGAGATGCACCCTTGCCACAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACATAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAATCAGTGCTCCCTACATTGCGTCTATATAATTTGGTTGAGTTGTGGCTGGATACAGCATCCACGTCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTTTTGGCTTATGCTCGGAAGCCTCCACACCCTTGA 1290 0.4349 MSNQVAKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKIMDEELESCPICCIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEIVTSIPLPARRKERSLSSLVVNTPRVSTQATMTGRRTKPSRKASGLRSTSFSIEKPIKKEEELLEDHPGSSSSPETSNKFAQNSGQSMSPCEGSQSAPNKGSENGAEPWDTKLDLWKPLNCLVEVASRSKSFKSHVQGSDAKLEITQVNESDSQVQKTKTKENKRKAKVEDEKISPYPASSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSATSSRLSRTGPIWFSLVASENQGGDAPLPQIPASYVRIKDGSVPVSFIQKYIMKKLDLTSETEVEIKCMGQSVLPTLRLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKPPHP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02252 429 MobiDBLite consensus disorder prediction 165 198 - -
Phac1g02252 429 SMART ring_2 19 59 IPR001841 -
Phac1g02252 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Phac1g02252 429 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Phac1g02252 429 CDD RING-HC_PCGF 17 59 - -
Phac1g02252 429 SUPERFAMILY RING/U-box 13 83 - -
Phac1g02252 429 MobiDBLite consensus disorder prediction 251 271 - -
Phac1g02252 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Phac1g02252 429 MobiDBLite consensus disorder prediction 112 147 - -
Phac1g02252 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 425 IPR044807 GO:0004842
Phac1g02252 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Phac1g02252 429 MobiDBLite consensus disorder prediction 241 310 - -
Phac1g02252 429 MobiDBLite consensus disorder prediction 149 164 - -
Phac1g02252 429 MobiDBLite consensus disorder prediction 112 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02252 Phac-Chr1 32178512 32185374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02252 3 348 C3H Transcription Factor Family AT2G30580 55.460 2.04e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02252 K16277 - gmx:100793731 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02252 1 32178512 32185374 Phac1g02252 1 32178512 32185374 ECH
Phac1g02252 1 32178512 32185374 Phac7g02777 7 31561647 31567007 PCT