Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02207 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGGGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACCTGGGAGGACTCAGTCAAGGCCTCTCTAACATTTCTCCTCAACAGCAACCCCAAAAGATCAAGAAAAAGAGAAGCCTTCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACACTTTTGGCCACTAATAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGACATAACCTCCCCTGGAAGCTCAAGCAAAGGAACAGTAAAGAGATAAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCATCTAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTAACAGCAAACCAATTAGCCGTTGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCATATCACCAGTTTCAACCAATGGGATTCGTCTCAAGAAAACCCTAACCCTAGTAACATCGCCACTTCCCTCCACATCAAGCCAGAATCTCAAACTTTCCACAACCCCACCCTCTCTTCACTTCTCCAACAACAAGAGCAGCAACACCCCAACAAGGGCATGATAATCTCACCCTTCAGGAACCTCCACGTGCCCTCACAAGCCTCCACTGCTGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATGACGGGCCCAAGCCCTGCTGCTGCTGGGCCTCAGCGAGCAATGGGTCACGTGACTCAGCTCGGCGCGGGCGAGTTTGGAACAGTGAGTCAACTCGACCCGGTGGTGGTGCCGGACTACGTGAGAGGGTTCCCCGGTCGGAGCCTCAAGAGTGACCGTCTAACTAGGGACTTCCTCGGACTCACGGGAGAAGCTAACGGCGGAGTTGACGGAGCCGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGTCGTTTGCAGGGGGTGTGGAGTACCTACAACCGCTCCGTCAGCATCACCACCACACGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1386 0.5087 MFPTAISNSTSLSGDASVSSGTKVQDLGGLSQGLSNISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEIKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLTANQLAVAATTTTNPFQSLFLFQTQQQNFQNHHITSFNQWDSSQENPNPSNIATSLHIKPESQTFHNPTLSSLLQQQEQQHPNKGMIISPFRNLHVPSQASTAATSAYMSATALLQKAATVGAAAMTGPSPAAAGPQRAMGHVTQLGAGEFGTVSQLDPVVVPDYVRGFPGRSLKSDRLTRDFLGLTGEANGGVDGAAVDVSTNVKDMLSFAGGVEYLQPLRQHHHHTLLKPQQGFGFLETTTAPETWGNC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02207 461 Gene3D Classic Zinc Finger 109 200 - -
Phac1g02207 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 409 IPR031140 -
Phac1g02207 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Phac1g02207 461 MobiDBLite consensus disorder prediction 1 59 - -
Phac1g02207 461 MobiDBLite consensus disorder prediction 1 48 - -
Phac1g02207 461 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Phac1g02207 461 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Phac1g02207 461 Gene3D Classic Zinc Finger 72 99 - -
Phac1g02207 461 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Phac1g02207 461 SMART c2h2final6 76 98 IPR013087 -
Phac1g02207 461 SMART c2h2final6 152 172 IPR013087 -
Phac1g02207 461 SMART c2h2final6 117 147 IPR013087 -
Phac1g02207 461 FunFam protein indeterminate-domain 12-like 55 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02207 Phac-Chr1 31795453 31798823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02207 15 448 IDZ Gene Family AT4G02670 50.881 1.33e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g02207 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02207 K25870 - gmx:100788975 715.301