Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02196 ATGTCTGCAGAAAGTGCTCAACATATTTGTAGCGGCAACGGATTATGTTACATTATGGGTTTGTCTGTTATTATTTATTTATTTATGATAAGATTAGTGTTGCTATTTGCTATCATTTCCAGGAATTTGACTCTCTCATTGGTAGTGAGTGGTAAAGTGAGTTTAGTTCAAATGGAGCAGTATGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAAAGTATGTCCTTAAGAAGATTCGTCTTGCTCGCCAAACTGACAGAACCCGTAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTTGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAACGGTGTTAACTTCTCTGAAGAGAAACTTTGCAAGTGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTGCATGTAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCGAGATATTCGTCTAGGGGACTTTGGGCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCCAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCACTTGACATACAATCATTGATTAACAAAATAAACAAGTGTATAGTAGCTCCCATGCCAGCTATGTATACTGCTGCTTTTCGGGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGCCCGAGCCAAGTTACGTAAGGAGAACTCGCTACGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATTCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGTATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCTCTTGTTCAGAAGAGAAAATCTATGAACTATCTGTAGGTTGTGTACGTAACAAATACAATGCTGACACATCAAAAGCCACAAAGCTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCCGTTACAGCTGCTGCCTCCGCCAAAAGGCAAACAATGGCACCATCAAAGACAACCTATACTGGTCCAAAACGAGATTCACTTCCAGTATCTAATGCACCATCTGGAAGGTTTTCCTCACCACCAAGAGCCAGGGCGAAAGCAAACTTGTACACCAATTTTTGTGTCCTTGGAAATTTGAACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATTCCCAATGGCTTTCTGTGAGGATCCCTTTCTCCCTATCCGTGGACCATCATTAACTTCAGCTCACTGCTCTTCAAGCTCAACACGGAGTACTACGGATATCTCCATCACAATGGACAAGTGTTTAATCCTGGAGGACAAAGTTACTGTCCCCAACAGTATCAGTTATGCTTGCCCTGGTCCAAAGGGAACTGAATGCCGTTCTGAGCATGTAAAAGCTTGTGTTTCAAGTCGCTCCTCTGCTGAGGTGGATCAGCGCCGGTTTGACACGTCCTCATACCAGCAGCGGGCAGAGGCATTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTAAAACAACAAAAGTTTGAAGAGCTTGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCCCCCAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1983 0.4276 MSAESAQHICSGNGLCYIMGLSVIIYLFMIRLVLLFAIISRNLTLSLVVSGKVSLVQMEQYEILEQIGKGAFGSALLVRHRHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALDIQSLINKINKCIVAPMPAMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIQKIHLKLNSPRRSTFPFQWPEPSYVRRTRYVEPESVSTLSDQDKFLSFSKDRALNPSISGTEQVSQCSTQRAHGLSSCSEEKIYELSVGCVRNKYNADTSKATKLSTVERTPRLRAVTAAASAKRQTMAPSKTTYTGPKRDSLPVSNAPSGRFSSPPRARAKANLYTNFCVLGNLNSPNVSVNAPRIDKMAEFPMAFCEDPFLPIRGPSLTSAHCSSSSTRSTTDISITMDKCLILEDKVTVPNSISYACPGPKGTECRSEHVKACVSSRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLKQQKFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02196 660 MobiDBLite consensus disorder prediction 438 476 - -
Phac1g02196 660 MobiDBLite consensus disorder prediction 443 472 - -
Phac1g02196 660 CDD STKc_Nek 60 315 - -
Phac1g02196 660 FunFam Serine/threonine-protein kinase Nek2 58 140 - -
Phac1g02196 660 FunFam Serine/threonine-protein kinase Nek3 143 389 - -
Phac1g02196 660 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Phac1g02196 660 Gene3D Transferase(Phosphotransferase) domain 1 143 364 - -
Phac1g02196 660 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 58 616 - -
Phac1g02196 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Phac1g02196 660 Gene3D Phosphorylase Kinase; domain 1 45 140 - -
Phac1g02196 660 ProSiteProfiles Protein kinase domain profile. 61 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g02196 660 SMART serkin_6 61 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g02196 660 SUPERFAMILY Protein kinase-like (PK-like) 57 384 IPR011009 -
Phac1g02196 660 Pfam Protein kinase domain 61 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02196 Phac-Chr1 31693921 31700654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02196 67 316 MAP Kinase Kinase Kinase AT1G53570 30.980 3.91e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phac1g02196 Pkinase 1.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02196 K08857 - gmx:100792678 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02196 1 31693921 31700654 Phac1g02196 1 31693921 31700654 ECH
Phac1g02196 1 31693921 31700654 Phac7g02725 7 31090971 31097886 PCT