Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02141 ATGAAGGAGGAAGAAAGCGTGGAAAGCGCGGAAAGCTGGAATATAAGGAATGCGAGGAAGAGGGGGAGAACAGATGAAGCAGTGGGAATCGTGGGTAATAATGGTATAATTAAACAGGAACCCTCAACGAGTCTTGAGGAACACCCGATGGAACAAATTCCCGAAAACCGCAATAGAAACGTGGTTGAGCAAGGGCAATTGGGTAGCGATGAATTACAATCTTATGGAAATCTGAACCGTTCAGAAGATAAGCTTTTGGGGCTGGAAATGATGGCCAAACTACAACGCCGCACCAGAGGTTTAAGACGCTTAAGGAAGATACATGGTGTGGATTTGGTGAATCGAACTGATATATGCCCCAGAAGAATAGTTAAAAAGGAAATAGTAGAAGGGAGTGAGCGAATACCTCAGGGCGAGATGAATGAAGCTGAGAAGGTTGCGGGAAATGAGAACAAAGTTTTGTTTGAGGAGGAAAAGGGTGTGAATACCCTTGAAAGAGTGAAGAGAATGAATTTCTTTAAACAAAAACGGTTTGTTCCAAGAAATAGCAGGACACGTAGAAAGCTGAACACAGGAAAACGAACTTTGTTTTCGTGGATGATTGCTTTGAAAACAATAAAATCACGGGAGAGGGTTTATTACATGGATCACAGGAGTAAAAGTATATCACTGGGTGGAGATGCCGTTGGAGATGGCATTCTGTGTGACTGTTGTTCTCAAGTTGTGTCCATTTCTGAGTTTGAATTTCACTCATGGAGGCTACAAATCTTTAATCCATTGAGTAGACCATCCAATCCACTGCAGAACATATGTTTGGGGAGAGGAAGAGGACTTTGTCTCTTGAAATGCATGGCAGAAGCCTGGGATAAGCAAACTGATTTTTCTTCTAAATTAGTTCATGTGGGGAAAGAAAAAAGCGACGACATTTGTAGAGTTTGTGGGGAAAAGGGTGACCTCATCTGTTGCAATACTTGCCCATCAACTTTCCATCGGAGCTGCTTGGGTATACAAACACTTCCAGATGGTGATTGGAACTGTATGAGTTGCTGCTGCAAATTTTGTGGGTTGTATTGTGGAAAGGTAGAGATCAAGTTTGAAGGGTTTGTCCCGTTTGAGATATCGTCGGAATGCCTTGTATGCGAGAGAAGATTTCACCAATGCTGTCTTGCTGCCAGAGGAGGCAATTCTGCTCGTTCCAAAAGACTATCCTTATGTGGAAACGGATGTAGGGAGATATACGAGGAACTTCAAAAGCTTCTTCGTGTTAGACATGATATAGAGGAAGGCTTGTCTTGGTCTTTCCTTTACCCTGAAGATGTTGACCCTAATTTAACAAGGTTAGAACCCGCTAAGGTTGAATGCAATGCCAAACTGGGTGTTGCATTATCGGTATTGAGTGAGAGCTTCATGCCATACATTGATGGAAGCGGGGCAGATATAATACAAAGTATTGTATACAGTTCTAGGTAA 1470 0.4252 MKEEESVESAESWNIRNARKRGRTDEAVGIVGNNGIIKQEPSTSLEEHPMEQIPENRNRNVVEQGQLGSDELQSYGNLNRSEDKLLGLEMMAKLQRRTRGLRRLRKIHGVDLVNRTDICPRRIVKKEIVEGSERIPQGEMNEAEKVAGNENKVLFEEEKGVNTLERVKRMNFFKQKRFVPRNSRTRRKLNTGKRTLFSWMIALKTIKSRERVYYMDHRSKSISLGGDAVGDGILCDCCSQVVSISEFEFHSWRLQIFNPLSRPSNPLQNICLGRGRGLCLLKCMAEAWDKQTDFSSKLVHVGKEKSDDICRVCGEKGDLICCNTCPSTFHRSCLGIQTLPDGDWNCMSCCCKFCGLYCGKVEIKFEGFVPFEISSECLVCERRFHQCCLAARGGNSARSKRLSLCGNGCREIYEELQKLLRVRHDIEEGLSWSFLYPEDVDPNLTRLEPAKVECNAKLGVALSVLSESFMPYIDGSGADIIQSIVYSSR* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02141 489 MobiDBLite consensus disorder prediction 31 52 - -
Phac1g02141 489 ProSitePatterns Zinc finger PHD-type signature. 310 349 IPR019786 -
Phac1g02141 489 SUPERFAMILY FYVE/PHD zinc finger 304 358 IPR011011 -
Phac1g02141 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 408 IPR013083 -
Phac1g02141 489 SMART PHD_3 353 410 IPR001965 -
Phac1g02141 489 SMART PHD_3 309 350 IPR001965 -
Phac1g02141 489 ProSiteProfiles Zinc finger PHD-type profile. 307 352 IPR019787 -
Phac1g02141 489 Pfam Tify domain binding domain 227 286 IPR032308 -
Phac1g02141 489 PANTHER PHD FINGER PROTEIN 12 72 488 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02141 Phac-Chr1 31426719 31433500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02141 191 487 PHD Transcription Factor Family AT1G05380 38.562 4.91e-63 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02141 - - pvu:PHAVU_001G152900g 892.493