Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02120 ATGGAAAACCCTAACACTGTGTCAAGAGGTTTGAAGCGTAAACTTGAAGGAGATCTAAGCCAGGACCAATCAGATTTCAAGGCCCAATGTCTCTTGTCAAATTTTCGTAAGAGGATTTTACGTCAGGTTTCTTTTCTTAATTCTGCTGCTGCTGCCTCGGATCCTGTTACCCTTAGGAAGGCCATTCACAACCTCTCTGTACTAGCAGAAAATGAGGATCATGTGGATACTGTACTTGATTGTGGTGTTGTTCCTGCTTTGGTGAGGCATTTTCAACTGCTAGATGTACGGAATGATGATAATGGTAGAATGGGTAAAGATTCTGTTGACGGAGTTATCGATCATGAACAGTTTGAGATAGCCAAAGGATGTGCGCTCCTTATCGAGCTTCTCGCAGTCAAACAAGAGTATCAGGATCTCATAGTAGGTGCTGGAGCCTTGCCTTGTCTAGTAGAATCTTTAAAGAGGCACAAGATCTGTACTATTTCTCAGCCACTCATTAATCTTCTAAGGAGAGCAGCTGATGCAATAACGAGCTTAGCTCATGAAAATAGTGACATCAAGACCTGTGTTAGGAGAGAAGGTGGTATACCTCCTCTGGTTGAATTGCTTGAATTCGATGATATTAAAGTACAGAGAGCAGCTGCACGGACCTTAAGAACTCTTGCATTTAAAAATGATGGCAATAAAAATCAGATAGTTGAATGCAATGCATTACCTACTCTTGTACTAATGCTTGGATCAGAGGATTCTAAATTACATTCTGAGGCGATTGGTGTGATTGGAAATCTGGTCCACTCTTCGCCAAATATTAAGAAAGATGTTCTTTTAGCTGGTGCTTTACAACCTGTCATTTGTTCACTTAGTTCTAGTTCCTATTGTTCGGAGAGCAGAAGAGAAGCAGCCCTTTTACTTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGTTCATATTGCCCAACGAGGGGCTATTCCACCATTGGTTGATATGCTGAAGTCTTCTGATGCCGAGCTTCAGGAAATGTCGTCTTTTGCACTTGGGAGGTTGGCACAGGACTCGCATAACCAAGCTGGTATTGTTCAAAGTGGAGGTATAGAGCCACTACTTAAACTTCTCGACTCAAAGAAGATGCCTGTCCAACAGAATGTTGTTTTTGCCCTCTATGGTCTTTCTGATAATGAGGACAATGTTGTTTGTATTATTAAGGCTGATGGTTTTCAAAGACTGAAGGCTGGAAATTTCAAAAATCAACAAACTGTAGAGTGTGCAGTGAAGACGTTAAAGAGATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATACGTCTTATGTGCTACTCTGAAGAAATGGTTCGAAGACGTGTAGCTATTGCTCTTGCATATTTATGTTCTTCTCGTGATAGTAAAACTATATTCATTGACAACAGAGGATTAAATTTGCTGCTGGACATGCTTAAATCTCCAAACGTAAGGCAGATGAGTGATGCTTCGGCTGCGCTTCACAAATTGGCTGCCAAAGCCCATTCTTCCGTTGTCTCCCTTTTTGAACTTCCTCCTCCATCACCAAGTCCCAAGGTGTACTTGGGCGAGGAATATGTAAACAATCCAAAACTTTCTGACGTTACATTCCTGGTTGAAGGTAGAACCTTTTATGCTCATAGAGATTGTTTAGTTTCTTCAGACATATTTCGCGCCATGTTTGATGGCAGTTATAGGGAGAGGGAAGCAAAAAATGTAGTGATTCCAAATATAAAGTGGGATATCTTTGAATTGATGATGAGATTTATATATACGAGAACGGTAGATGTCAGTTTGGATATGGCTCAGGATCTCCTTAGAGCGGCAGATCAGTATCTTTTGGATGGTCTCAAGCATATTTGTGAACATACTATTATTCAGGTACACCAAAATTATGTTTTGCTTTTATGA 1938 0.4076 MENPNTVSRGLKRKLEGDLSQDQSDFKAQCLLSNFRKRILRQVSFLNSAAAASDPVTLRKAIHNLSVLAENEDHVDTVLDCGVVPALVRHFQLLDVRNDDNGRMGKDSVDGVIDHEQFEIAKGCALLIELLAVKQEYQDLIVGAGALPCLVESLKRHKICTISQPLINLLRRAADAITSLAHENSDIKTCVRREGGIPPLVELLEFDDIKVQRAAARTLRTLAFKNDGNKNQIVECNALPTLVLMLGSEDSKLHSEAIGVIGNLVHSSPNIKKDVLLAGALQPVICSLSSSSYCSESRREAALLLGQFATTDSDCKVHIAQRGAIPPLVDMLKSSDAELQEMSSFALGRLAQDSHNQAGIVQSGGIEPLLKLLDSKKMPVQQNVVFALYGLSDNEDNVVCIIKADGFQRLKAGNFKNQQTVECAVKTLKRLEEKTQGRVLKHLIRLMCYSEEMVRRRVAIALAYLCSSRDSKTIFIDNRGLNLLLDMLKSPNVRQMSDASAALHKLAAKAHSSVVSLFELPPPSPSPKVYLGEEYVNNPKLSDVTFLVEGRTFYAHRDCLVSSDIFRAMFDGSYREREAKNVVIPNIKWDIFELMMRFIYTRTVDVSLDMAQDLLRAADQYLLDGLKHICEHTIIQVHQNYVLLL* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02120 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Phac1g02120 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 312 352 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 71 133 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 134 182 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 226 266 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 353 393 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 268 310 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 426 467 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 184 224 IPR000225 GO:0005515
Phac1g02120 645 SMART arm_5 468 508 IPR000225 GO:0005515
Phac1g02120 645 Gene3D Potassium Channel Kv1.1; Chain A 530 644 IPR011333 -
Phac1g02120 645 Gene3D - 165 282 IPR011989 -
Phac1g02120 645 Gene3D - 283 522 IPR011989 -
Phac1g02120 645 Pfam Armadillo/beta-catenin-like repeat 312 350 IPR000225 GO:0005515
Phac1g02120 645 Pfam Armadillo/beta-catenin-like repeat 184 223 IPR000225 GO:0005515
Phac1g02120 645 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Phac1g02120 645 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 636 IPR044282 -
Phac1g02120 645 SMART BTB_4 542 638 IPR000210 GO:0005515
Phac1g02120 645 Pfam BTB/POZ domain 534 636 IPR000210 GO:0005515
Phac1g02120 645 SUPERFAMILY ARM repeat 168 513 IPR016024 -
Phac1g02120 645 Gene3D - 27 164 IPR011989 -
Phac1g02120 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Phac1g02120 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Phac1g02120 645 SUPERFAMILY POZ domain 533 635 IPR011333 -
Phac1g02120 645 ProSiteProfiles BTB domain profile. 542 608 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02120 Phac-Chr1 31113218 31118497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02120 254 522 U-box Gene Family AT5G67340 26.761 4.36e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phac1g02120 BTB 1.8e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02120 - - gmx:100783124 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02120 1 31113218 31118497 Phac1g02120 1 31113218 31118497 ECH