Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02002 ATGGAGTTGGCTTTGAGCTTAGGCCACACAGACAATGCTTCACTAGGTTTCTCCATACCAACACCTTCCTCAGATCCACCCCTTCACCTCCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATGTAAACACCCATATCATATCCCTTCATCTTTCTTCTTTCTTTCATTCTCTCATGTGTCTGCATGTTTCTTCCTAACAGTAGGCATGGAAGAGGTACCGGTGAGAACGCTTGATGACACGGACGACGGTGCTGCAGTCTCATCCCCCAACAGTGCAGTATCGTCATTTCAGATGGCTTTTTGCAGAAACAATAGAAAGTTTTCTGAGGGTGACAGCGAAGAAGACGAAAATGGCACAGCAAGGAAAAAACTCAGACTCTCCAAAACACAATCAGCTTTCCTGGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAAAAACTTGTTCTTGCAAAAGAGTTAAATCTCCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGAGTCTGACAGAAGAGAATAAGAGGTTACAGAAGGAACTGCAGGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCAAGCAGCTTCCGGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCACCTCCACCTCCGCCGCCGCCACCAACAATGGTGGTGTTTCTCGGGACAAGCCCAGAATATTGTCAAGCCCACCCGCAGCAGGCCCACATGGCCCATCAGATTGCTTCTTCATCTGA 867 0.4856 MELALSLGHTDNASLGFSIPTPSSDPPLHLHHLLPSTPVLPSPRLPIPWLSHACKHPYHIPSSFFFLSFSHVSACFFLTVGMEEVPVRTLDDTDDGAAVSSPNSAVSSFQMAFCRNNRKFSEGDSEEDENGTARKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENKRLQKELQELRALKTCEPFFKQLPATTLTMCPSCERVATTTSTSAAATNNGGVSRDKPRILSSPPAAGPHGPSDCFFI* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02002 288 SUPERFAMILY Homeodomain-like 127 191 IPR009057 -
Phac1g02002 288 CDD homeodomain 134 191 IPR001356 GO:0003677
Phac1g02002 288 Gene3D - 138 188 - -
Phac1g02002 288 CDD bZIP 181 222 - -
Phac1g02002 288 SMART HOX_1 132 194 IPR001356 GO:0003677
Phac1g02002 288 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Phac1g02002 288 MobiDBLite consensus disorder prediction 252 283 - -
Phac1g02002 288 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Phac1g02002 288 Coils Coil 196 223 - -
Phac1g02002 288 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Phac1g02002 288 FunFam Homeobox-leucine zipper protein HAT22 138 184 - -
Phac1g02002 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 65 260 - -
Phac1g02002 288 Pfam HD-ZIP protein N terminus 14 109 IPR006712 GO:0005634
Phac1g02002 288 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Phac1g02002 288 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02002 Phac-Chr1 29803787 29805395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02002 124 247 Homeobox Transcription Factor Family AT4G37790 74.400 2.71e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac1g02002 HD-ZIP_N 8.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02002 K09338 - gmx:100784703 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g02002 1 29803787 29805395 Phac1g02002 1 29803787 29805395 ECH