Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g02001 ATGGAGTTGGCTTTGAGCTTAGGCCACACAGACAATGCTTCACTAGGTTTCTCCATACCAACACCTTCCTCAGATCCACCCCTTCACCTCCACCACCTTCTTCCTTCAACACCAGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATTAGGCATGGAAGAGGTACCGGTGAGAACGCTTGATGACACGGACGACGGTGCTGCAGTCTCATCCCCCAACAGTGCAGTATCGTCATTTCAGATGGCTTTTTGCAGAAACAATAGAAAGTTTTCTGAGGGTGACAGCGAAGAAGACGAAAATGGCACAGCAAGGAAAAAACTCAGACTCTCCAAAACACAATCAGCTTTCCTGGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAAAAACTTGTTCTTGCAAAAGAGTTAAATCTCCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGAGTCTGACAGAAGAGAATAAGAGGTTACAGAAGGAACTGCAGGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCAAGCAGCTTCCGGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCACCTCCACCTCCGCCGCCGCCACCAACAATGGTGGTGTTTCTCGGGACAAGCCCAGAATATTGTCAAGCCCACCCGCAGCAGGCCCACATGGCCCATCAGATTGCTTCTTCATCTGA 789 0.4968 MELALSLGHTDNASLGFSIPTPSSDPPLHLHHLLPSTPVLPSPRLPIPWLSHALGMEEVPVRTLDDTDDGAAVSSPNSAVSSFQMAFCRNNRKFSEGDSEEDENGTARKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENKRLQKELQELRALKTCEPFFKQLPATTLTMCPSCERVATTTSTSAAATNNGGVSRDKPRILSSPPAAGPHGPSDCFFI* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g02001 262 MobiDBLite consensus disorder prediction 226 257 - -
Phac1g02001 262 Pfam Homeodomain 108 162 IPR001356 GO:0003677
Phac1g02001 262 SMART HOX_1 106 168 IPR001356 GO:0003677
Phac1g02001 262 CDD bZIP 157 196 - -
Phac1g02001 262 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 36 234 - -
Phac1g02001 262 Gene3D - 112 162 - -
Phac1g02001 262 Coils Coil 170 197 - -
Phac1g02001 262 FunFam Homeobox-leucine zipper protein HAT22 112 158 - -
Phac1g02001 262 SUPERFAMILY Homeodomain-like 101 165 IPR009057 -
Phac1g02001 262 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Phac1g02001 262 SMART halz 164 207 IPR003106 GO:0006355|GO:0043565
Phac1g02001 262 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Phac1g02001 262 CDD homeodomain 108 165 IPR001356 GO:0003677
Phac1g02001 262 Pfam Homeobox associated leucine zipper 164 198 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g02001 Phac-Chr1 29803787 29805395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g02001 98 221 Homeobox Transcription Factor Family AT4G37790 74.400 1.40e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac1g02001 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g02001 K09338 - gmx:100784703 332.413