Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01998 ATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCAGAACCTGAAACTGGCCCCATAAGCAATGAAGCTGTGAACTTGGATGATTGGATAGGAGAGCCTCTTCAGAGAATTAGCGAAGCTGTGAGGTTTAGGGCACGGCAACGGTGGCGATGGCGGCATCTTCCGCTACCGCATCCTGAACTTCATGTTCACATCCCAACTGAAGCTGCGCGGCATTTTCATATACCTCCTGAGGCTCACAATATCTCGATGGAATTGAACCAGTTTCTGGTCAATTCTGGAAATGGAACTGCCTTACAGGCTGGAGAAGGCAGTGTGGCGGCGGAGGAGAGAATGGAGGAGGCGCCGAAGGCGTGTGAGAATGTGAATGGTGTTGCAGAGGACGAGGCTTCACAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCACTGATGGGGATTTTTTTGATTGTAACATCTGTTTGGACATCTCTAGGGATCCTGTTGTGACTTGTTGTGGGCATTTGTTTTGTTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCGGATGCGAAAGAGTGTCCAGTTTGTAAGGGAGAGGTGACTCTCAAAAGTGTTACCCCAATATATGGCCGTGGGAACAATGTCCGAGGTCATGAGGAGGATTCTGCTCTTAAGATCCCTCCGAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTCGGGAGTAGAATTGATCTTACTCGTGATTTTGTTCAGCCACATGAAGTGGATGGTGCCCGTGAAACTGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATGCGGAGAGAGCAGAATTTAGGGCCACTCCCAGAGGATGTAATGGCTTTGGCTCAGAATAATGCTAATACTGCCGAGGCAGGGGATGACCGAAGTAGGGTGCAATCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCTACTCTTTCGTCAGCACTGACTTCTGCTGAAAGGTTAGTTGAGGCGTATTTCCGTAGCAATCCAATTGGTAGGAACCAAGAACAACCTCCTCCTCCAGTTGATGACAGGGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGACGCAGACGTTTGAACTGA 1329 0.4846 MEEETSDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPLQRISEAVRFRARQRWRWRHLPLPHPELHVHIPTEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERMEEAPKACENVNGVAEDEASQKKDDVEKGSGTDGDFFDCNICLDISRDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNVRGHEEDSALKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDFVQPHEVDGARETAERTTSLLSRFLTARGMRREQNLGPLPEDVMALAQNNANTAEAGDDRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPIGRNQEQPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01998 442 MobiDBLite consensus disorder prediction 420 442 - -
Phac1g01998 442 MobiDBLite consensus disorder prediction 1 22 - -
Phac1g01998 442 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Phac1g01998 442 MobiDBLite consensus disorder prediction 366 386 - -
Phac1g01998 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 123 334 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac1g01998 442 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Phac1g01998 442 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Phac1g01998 442 SMART ring_2 157 197 IPR001841 -
Phac1g01998 442 MobiDBLite consensus disorder prediction 127 147 - -
Phac1g01998 442 CDD RING-HC_AtRMA-like 155 198 - -
Phac1g01998 442 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Phac1g01998 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 216 IPR013083 -
Phac1g01998 442 SUPERFAMILY RING/U-box 152 210 - -
Phac1g01998 442 MobiDBLite consensus disorder prediction 409 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01998 Phac-Chr1 29767053 29769979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01998 1 433 C3H Transcription Factor Family AT3G58030 55.188 1.66e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01998 K10666 - gmx:100811099 774.237